Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq57 105 7e-18 seq10 102 8e-17 seq80 91.5 1e-13 >seq57 Length=110979 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || || || || | || |||||| | | Sbjct 11440 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACGATTACTTTAGAAGTCGAGTCTTCT 11381 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||| ||||||| | ||||| || || ||||| | || ||| Sbjct 11380 GACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 11321 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || ||||| || || || | || ||||| | |||||| ||| Sbjct 11320 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAAC 11261 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| || ||| Sbjct 11260 ATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGT 11225 >seq10 Length=205532 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 || ||||||||||||| |||||||| || || || ||||| || || || | || |||| Sbjct 110212 TTTAAAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCG 110271 Query 38296 AGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 | | | || || | ||| | || |||| || | ||||| || || || || Sbjct 110272 AATCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTC 110331 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | ||||||||| | || || | || || ||||| || || || | || || | | | Sbjct 110332 CTGACCAACAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTG 110391 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||||||| | || || || ||||| || ||| Sbjct 110392 ACTACAACATCCAAAAGGAATCTACCCTTCACTTGGTCCTTCGT 110435 >seq80 Length=87281 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||||||||| ||| | || || || | | || | ||| |||||||| ||||| Sbjct 44548 CAAGCAAAGTCAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAA 44607 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| || || ||||||||||||||||| |||| || || || || |||||| Sbjct 44608 CCGGGCATCAGACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAG 44667 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||| || || || || || || || || Sbjct 44668 ATACCTTCGACAGCAGCAAAGGCAACAAGACGTTC 44702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169079964800