Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq57 150 4e-31 seq24 150 4e-31 seq10 150 4e-31 seq118 127 5e-24 seq15 100 6e-16 >seq57 Length=110979 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || ||||| || || || ||| || || | ||||||||||| || Sbjct 11238 TGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCTTCGAGTTGT 11297 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || |||||||| || |||||||| ||||| ||||||||||||||| Sbjct 11298 TTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATTTTT 11357 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || || || ||||| ||| || ||||| | |||| ||||||||| || Sbjct 11358 TGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCGTCTTTCCAGTA 11417 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 11418 AGTGTCTTGACAAAGATTTGCAT 11440 >seq24 Length=153386 Score = 150 bits (166), Expect = 4e-31 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| ||||| || || ||||| || || || ||| |||| || | || |||| Sbjct 151809 AACTAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGCTCAAG-GTACGACCGTCTT 151867 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| || ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct 151868 CGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTT 151927 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 |||| |||||||||||||| ||||||||||| ||||| Sbjct 151928 GAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAACT 151964 >seq10 Length=205532 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || ||||| || ||||| || | ||| | ||||| || || || Sbjct 110423 GTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCCTCAAGTTG 110364 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || |||||||||| |||||||| ||||| || ||||| ||||||||||| || Sbjct 110363 TTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCTTGAATCTT 110304 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || || | || ||| ||| ||||| | |||| |||||| || || Sbjct 110303 TTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTCTTGCCGGT 110244 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | ||| |||||||| | |||||||| Sbjct 110243 AAGAGTCTTTACGAAGATTTGCATTT 110218 >seq118 Length=67844 Score = 127 bits (140), Expect = 5e-24 Identities = 124/157 (79%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| || || || |||||||| |||||||| |||| || | || |||| Sbjct 19105 AACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAG-GTACGACCGTCTT 19047 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| || ||||| ||||| || || |||||||| || ||||| || ||||| || |||| Sbjct 19046 CGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTT 18987 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 | || ||||||||||| || ||||||||||| || || Sbjct 18986 GGATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 18950 >seq15 Length=177086 Score = 100 bits (110), Expect = 6e-16 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 160513 CTGGCACGTTGACATCTTTGACTTTGTCGA--TGCGAAAAAGCCCGGAGGTGATGACCTG 160570 |||||| | ||||| || |||| | || ||||||||| | | || | ||| Sbjct 93005 CTGGCATGCAGACATTTTCACCTTTTTAGACTTGCGAAAAAACTTTG--GTAAAGACGAA 93062 Query 160571 ATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTG 160630 || ||||| | || | ||||| || ||||| | | |||||||||||| || | || Sbjct 93063 ATCAGAGCTCGTGATCTGTTCTATGCTCTCTGGGTTCCTGATCTTTTCATGCAGCGTGTC 93122 Query 160631 AAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTT 160690 | |||| ||| |||||| || || || ||||||||||| |||||| | |||| || Sbjct 93123 AGAGACGGTGGTGATTGGTCTCTATTTTGCCCCAATGAAGCTCCTGGATTACATGAAGTC 93182 Query 160691 TATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAG 160750 | ||| ||| || | |||| ||||||| ||||||| || |||||||| | | | Sbjct 93183 TGGGGTGACGAATTTGTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTAGAGAA 93242 Query 160751 GTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATG 160810 | ||||| ||| | |||||| || ||| | | || ||| ||| |||| Sbjct 93243 ACAATCAAGGCTCAAAAGCTGTGGTATGCCATTTTGGAGGCACAAACGGAGACTGGTAAT 93302 Query 160811 CCCTTTATCGCATACAAGGATGCCATCTGTC-GCAAGAGTAACCAGAAGAACTTTGG 160866 || || || || ||||||| | | | | | |||||||| ||| | ||||| || Sbjct 93303 CCATTCATACTCTATAAGGATG-CTTGTAACAGAAAGAGTAATCAGCAAAACTTGGG 93358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473141936365