Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq80 273 2e-68 seq15 104 3e-17 >seq80 Length=87281 Score = 273 bits (302), Expect = 2e-68 Identities = 567/836 (68%), Gaps = 10/836 (1%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-T 18730 |||||| || | || | ||||||||||| || || || || | | || || ||| | Sbjct 44259 TTGATAATCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGAT-CATGT 44317 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 ||||||| ||||||||||| | | | || || || | |||||| | | | | | Sbjct 44318 CCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGA 44377 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | | ||| || || |||| || || ||||| || | ||||| || || | Sbjct 44378 GACGATCAGCAACGAATTCGATGTACTGACACATCAAGGCAGAGTTCATGCCGATGAGAG 44437 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 || || || ||||| || | |||||||||||| || | || || || | || ||| Sbjct 44438 CGACGGGAAGAGCATCCGTCAAAAATTCTTGTTCAATGCTGACAGCTTCCAAGATGATAT 44497 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAAT 18970 || | |||| ||||| | | ||||||| |||| | | ||| ||||| | Sbjct 44498 CCTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGT 44557 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 || ||| || || || || | || ||||||||||| ||||| ||||| ||||||| Sbjct 44558 CAGTATGAAGACCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCA 44617 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 | || | |||||| | ||| || || |||||||| || ||||| ||||| |||||||| | Sbjct 44618 GACCACGTTTTTTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGA 44677 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCA 19150 | || ||||| ||||| || | ||| || | || | | ||| ||||||||| | Sbjct 44678 CAGCAGCAAAGGCAACAAGACGTTCAGCAAA---AGAACCGTTAGAGGAAATCCATTTGA 44734 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG-ATAC 19209 |||||||||||||| | || | ||| || || || || |||| | ||| || || Sbjct 44735 AGGCCCAATCAGCCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTT 44794 Query 19210 ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269 | ||| | | ||||| | ||| | || ||||| | |||||| |||||| ||| Sbjct 44795 CT-TTCTCTTGGTTGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGA 44853 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 |||||||| || || ||||| || || |||||| | ||||| | |||| |||||| Sbjct 44854 ATATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCA 44913 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389 |||||| ||| ||||| ||||||||||| || ||||| | | ||||| || || Sbjct 44914 TCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCC 44973 Query 19390 AATACATGTTTAATAAAATGTTTTTCATCTGAGGT--TAATGTATT-CCAATCATTAATA 19446 || || | ||||| ||| | | ||| | ||| || |||||||| || Sbjct 44974 AAAACGCGAGAGATAAAGAAACGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGG 45033 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 || || ||||| | ||||||| |||||||||| ||||| || ||||| ||||| Sbjct 45034 TCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 45089 >seq15 Length=177086 Score = 104 bits (114), Expect = 3e-17 Identities = 424/669 (63%), Gaps = 5/669 (1%) Strand=Plus/Plus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 ||||||||||| |||||||||| || |||| |||| || |||||| || | | Sbjct 131509 AAATAATACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAGT 131568 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCA 47138 || | | | ||||| | | || | ||| | ||||||| || |||||||| || Sbjct 131569 TTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCAATAAAGGCT 131628 Query 47139 CCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAA 47198 ||||| ||||| ||||| || | |||| ||||||| |||||||||||||| || || Sbjct 131629 CCTCTGTCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGTCTTGTAT 131688 Query 47199 ATTTGTTTAATGTCTTCTGG---GAGATTAGTATTTTGAATAGATCCTCCgttttctata 47255 | | ||| | || || || | | | || ||| ||| || || | | || Sbjct 131689 AGCTTTTTGAGATCATCAGGAATGCCAGGAATACGTTGGATACTACCACCATGAGCGATC 131748 Query 47256 attttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 || |||| || | | || ||| | ||||| | | || | | ||| Sbjct 131749 ATCATGTTCTTGATGTTATCATTCCATAAACCGAGTTCAATGAGGTCATTCAGTAAATGC 131808 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 | || || ||||| ||||| ||| | | || | ||| |||| ||||| || || || Sbjct 131809 TGGTTGACTATTTGGAATTCACCACTTTGAACACGACGCGTATAAATATTGCTAGTGTAA 131868 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 || || | |||| ||||| || || |||||| ||| || |||||||| | ||| Sbjct 131869 GGCTCAAAGCATTCGTTATTGCCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCA 131928 Query 47436 ACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 || || ||| | || | || |||||||| | || | ||||| || Sbjct 131929 AC-AAGAAGAGAGTTACGAACACCATATTTCTTGATATTGGCTCTCAAGGTATTCCAGTC 131987 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 | | || || |||||||| ||||| | ||||||||| |||| ||||| || Sbjct 131988 GAGATGTTCCGAGCCTTTGACATTCCATAAATCGTGTTGAAGAATACCTTGGCTTATAGG 132047 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | || || | ||| || || | | ||| || || ||||| || || | Sbjct 132048 TGAGCCTTCGTAGGTCTCATAGGGCCCCTGTTCTTTTGCAAGCTCACATGAAGCCTCTAG 132107 Query 47615 TGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC 47674 ||| | |||| ||| |||| || || | | |||| | | ||||| | || || Sbjct 132108 AGCAGCAAAATAAATTCTTTCGAAAATATCTCTGTTCAATTGAGCAGCTTCAGGAGAATC 132167 Query 47675 AAAAGGATA 47683 ||| ||||| Sbjct 132168 AAAGGGATA 132176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104619315800