Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq66 288 1e-72 >seq66 Length=102801 Score = 288 bits (318), Expect = 1e-72 Identities = 530/766 (69%), Gaps = 21/766 (3%) Strand=Plus/Minus Query 47553 AACCAATTGTTTAAAAGAAGTTTTAGGTTCCCAACCCAATTTTTTCTTTGCCTTAGAGGC 47612 |||||||| | ||||| | || | | ||| ||||||| | | |||||||| | | Sbjct 13320 AACCAATTCGTCAAAAGTAACCTTGCGCTTCCAGCCCAATTCTGTGTTTGCCTTTGTAGG 13261 Query 47613 ATCACCTAATAAGGTCTCTACTTCAGCAGGACGGAAATATTTAGAGTCAATTCTGATA-- 47670 |||||| |||||| || ||||||||||||||||| || || | |||||| | | | Sbjct 13260 ATCACCCAATAAGAGATCAACTTCAGCAGGACGGAAGTACTTGGGGTCAATGCGCACACG 13201 Query 47671 -ACCGTTTTACCA---TCAGAATCAATACCAACTTCATCAAGACCAGAACCTTCCCATCT 47726 ||| || || |||| ||| |||||||||| | | ||| ||||||||| Sbjct 13200 GACC---TTGCCTGTTTCAGCATCTTTACCAACTTCGTTCACACCTTCACCTTCCCAAAC 13144 Query 47727 AATATTCATATCAAAATAAGGTGCA-GATTCCTCAACAAACTGACGGACAGAATATTGAT 47785 |||| | | || | | || | | | || ||||| | ||| | | | | Sbjct 13143 AATAGT-ACGTCCAGTCACCTTGAAAGCCTTTTCGACAAAGCTTCTGACTGTGTGTGTTT 13085 Query 47786 TTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCT 47845 || || || | |||||||| | ||||| ||||| || ||||| | ||||||| ||| Sbjct 13084 CACCAGTAGCCAAGACAAAATCTTGAGGTTGATCTTGCTGCAGCATGAGCCACATACCCT 13025 Query 47846 CGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAAC 47905 |||||||||| | ||||||||||| ||||| ||||||| ||| || ||||| | | Sbjct 13024 CGACATAATCACGAGCATGTCCCCAATCACGCTTAGCATCAATATTACCGAGATAAAGGC 12965 Query 47906 AGTCTTG-CTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 | ||||| | | || | ||| || | || | ||||||| || || || || Sbjct 12964 ACTCTTGACGTCCCAAGTG-GATGTCTGCAACAGCACGACTAATCTTTCGGGTAACGAAG 12906 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 || |||||| | || |||||||| || || |||||||| |||||||| |||| | Sbjct 12905 GTACGACCACGACGAGGCGATTCATGGTTGAAGAGAATACCGTTACAGGCAAACATGTTG 12846 Query 48025 TATGATTCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAG 48082 ||||||||||| ||||| | || ||||| || ||||| || || || |||||||||| Sbjct 12845 TATGATTCACGGTAGTTGACCGTA--ATCCAATAGCCATAAAGCTTGGCTACACCATAAG 12788 Query 48083 GAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAA 48142 ||||||| |||||||| ||||| || || | || || || || || |||||||| | Sbjct 12787 GAGAACGGGGATAGAAGGGTGTCGTTTCCTTTTGGGGTGTTTCAACTACTTTACCATAGA 12728 Query 48143 GTTCACTGGTGGATGCTTGATAGATACGAACCCTATC--TTCCATCTCAAGCAAACGGAC 48200 ||||| || || |||||||||| |||||| | ||| || | | |||| ||||| Sbjct 12727 GTTCAGAAGTAGAAGCTTGATAGAAACGAACACGATCGGTTAAACCGCAAG--TACGGAT 12670 Query 48201 TGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTC 48260 || ||||||| | || ||||| | || || | ||| ||||| || | ||| || Sbjct 12669 AGCATCAAGCAAACGAAGTGTGCCAAGAGCGTCGACGTCACCGGTATATTCTGACATGTC 12610 Query 48261 AAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCA 48306 ||| || ||||| |||||| || || ||||||| |||| |||| Sbjct 12609 AAAAGAGACCTTGACATGAGATTGAGCTGCAAGATTGTAAACCTCA 12564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665489450385400