Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq57 176 9e-39 seq10 172 1e-37 seq24 125 1e-23 seq118 122 2e-22 >seq57 Length=110979 Score = 176 bits (194), Expect = 9e-39 Identities = 183/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || ||||||||||| || || || ||||| || Sbjct 11212 TACCACCACGGAGACGAAGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGC 11271 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| ||||| |||||||| ||||||||||| || | ||||||||| |||| Sbjct 11272 TTAGGGTACGACCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAG 11331 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| ||| ||||||||| || || || ||| || || | Sbjct 11332 GAATACCTTCCTTGTCTTGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGA 11391 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 |||| ||||| |||||||| || || | ||||| ||||| || ||||| | ||||||| Sbjct 11392 CTTCTAAAGTAATCGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATGA-TATATTT 11449 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 82615 TAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAG 82674 ||||||| | || || ||||| ||| ||| | ||| | ||| |||||||| |||| Sbjct 11017 TAGATTCACTTTGGATGTTATATTCATTCAGAGTATGACCATTTTCGAGTTGTTTGCCAG 11076 Query 82675 CAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT- 82733 ||||||||| | |||||||| || || || |||| | |||||||| ||| ||||| Sbjct 11077 CAAAGATTAAACGTTGTTGATTTGACGGAATGTCTTCTCTTTCTTGAAT-TTTACTTTTC 11135 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 | | | |||| |||||| | | ||||| || | || ||| | || | | ||| Sbjct 11136 ATAATATCAACGGTATCAGATGAGTTGACTTCTAACGAAATTGTCGTTCCAGCAAGTGTC 11195 Query 82794 TTTACAAATATCTGCAT 82810 || |||||||| ||||| Sbjct 11196 TTGACAAATATTTGCAT 11212 >seq10 Length=205532 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || |||||||| || || || || || ||| Sbjct 110448 TACCACCACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCAC 110389 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || |||||||| ||||||||||| ||||| ||||| || |||| Sbjct 110388 TCAAAGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAG 110329 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||| || |||||||| || ||||| || ||| | Sbjct 110328 GGATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGA 110269 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||| ||||| ||||||||||| || | |||||||| || || |||||| || Sbjct 110268 CTTCTAAAGTAATCGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTTT 110216 >seq24 Length=153386 Score = 125 bits (138), Expect = 1e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||||||| ||||||||||| || || || ||||| || Sbjct 151790 TACCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGC 151849 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || |||||||| || | |||||| || |||| Sbjct 151850 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAG 151909 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | || |||||||| |||||||||||| || || || ||||| || || Sbjct 151910 GAATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTC 151958 >seq118 Length=67844 Score = 122 bits (134), Expect = 2e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 19124 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAC 19065 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| |||||||| || || || || || | ||||||||| |||| Sbjct 19064 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAG 19005 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCA 82751 | || |||||||||||||| |||||| || ||||| ||||| || ||| Sbjct 19004 GGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCA 18955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981819715101705