Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq80 116 9e-21 seq180 100 7e-16 seq21 87.8 4e-12 seq22 84.2 5e-11 >seq80 Length=87281 Score = 116 bits (128), Expect = 9e-21 Identities = 354/546 (65%), Gaps = 12/546 (2%) Strand=Plus/Minus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||||||| ||| || |||| ||||| | |||||| |||||| ||| ||| || || Sbjct 45089 TATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGACCTT 45030 Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAAAGAT------TTTGTTTCCAAAGTTCTT 131581 ||||||||||||| | ||| ||||| || ||| | || ||| | Sbjct 45029 CATGATTGGGAAAACAAGA---TGACCGAAAACGAACGTTTCTTTATCTCTCGCGTTTTG 44973 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641 || ||||| || || ||||||||||||| |||||| | ||| || || | | Sbjct 44972 GCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTTGTGAT 44913 Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701 ||| | | |||||||||| | || ||||| |||||| | ||||| |||| Sbjct 44912 GAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAAATATT 44853 Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAAT 131761 || || | || | |||||||| | | | | ||| | | | || ||| | Sbjct 44852 CACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGACAACCAAGAGAAAGAA 44793 Query 131762 AAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATT 131821 | | ||| |||| | | | | ||| || || | || || || ||||| | Sbjct 44792 ATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAGAGAAAGGCTGATTGGGCCTTC 44733 Query 131822 AAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTT 131881 ||||||||| | | || | |||| || | | ||||| || |||||| ||| Sbjct 44732 AAATGGATTTCCTCTAA---CGGTTCTTTTGCTGAACGTCTTGTTGCCTTTGCTGCTGTC 44676 Query 131882 GAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTG 131941 |||||||| ||||| || ||| | || | | ||||||||||| || || ||||| || Sbjct 44675 GAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATCTTTTGGCTCAAAAAACGTGGTCTG 44616 Query 131942 ATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAA 132001 ||||| || | |||| |||| |||| |||| | ||||||| | |||||||| Sbjct 44615 ATGCCCGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGTCTTCATACTGAC 44556 Query 132002 TTTGCT 132007 |||||| Sbjct 44555 TTTGCT 44550 >seq180 Length=47968 Score = 100 bits (110), Expect = 7e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGCAAGTGTAATGAAG 72228 ||||| |||||||| || || ||| || ||||||||| ||| || |||||| ||| Sbjct 13663 ACTTTACCAAACACGACATGCTTGCCATCCAAATGTGGTGTAGGAACAGTTGTAATAAAG 13722 Query 72229 AATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAA 72288 ||||| || ||||| |||| || | ||| ||||| || | ||| || || | Sbjct 13723 AATTGAGATCCATTTGTTCCAGGGCCAGCGTTTGCCATGGATAACAAGAATGGTTTGTCA 13782 Query 72289 TGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTT 72348 ||||||||| || || ||||||||||| |||| ||||| ||| || ||| | Sbjct 13783 TGCTTTAATTCAAAGTTTTCATCTTCAAACTTTTCACCATAAATAGATTCACCGCCTGTA 13842 Query 72349 CCATCA-AAGTTCACAATATCACCTCCTTGAACCATAAAATT 72389 || | | || | || |||||| ||||||||||||||||| Sbjct 13843 CCGTTACCAGCT-GTAAAATCACCACCTTGAACCATAAAATT 13883 >seq21 Length=158922 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 148318 ACCCTATCTGGGGATCGAACCCAGAATCTTCCGCTTAGAAGGCGGACGCGATATCCAATT 148377 |||| || |||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 70410 ACCCAATGCGGGGGTCGAACCCGCAATCTTCCGCTTAGAAGGCGGACGCCGTATCCAATT 70351 Query 148378 TCGCCAATAGGGC 148390 | |||||| |||| Sbjct 70350 TGGCCAATCGGGC 70338 >seq22 Length=157284 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| || |||||||| | || || || || || | | | || || |||||| Sbjct 7776 GATAATGATGTCGTCTTGTTCAATCGTCAGCCTTCGCTTCACAGATTATCCATCATGGCT 7717 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT 305437 || | ||| || | || | ||||| |||| || | | ||| ||| ||||| Sbjct 7716 CACTTTGCCAAGGTGATGCCTTGGAGAACATTCAGATTCAACGAATGTGTCTGTTCGCCT 7657 Query 305438 TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||| |||||||| || ||||||||||||||||| | || ||| || Sbjct 7656 TATAATGCTGATTTTGACGGTGATGAAATGAATATGCACTTGCCACAAACA 7606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186803752406795