Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 131 2e-25 seq80 105 7e-18 >seq15 Length=177086 Score = 131 bits (144), Expect = 2e-25 Identities = 309/462 (67%), Gaps = 6/462 (1%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| |||| ||| ||| |||||||| ||||| | || || | || || Sbjct 92657 TGAGACATACAACTTGATGTCTGAAAGATACTTTACACACGCTAGTCCTACTTTATTTAA 92716 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || || || || ||||| || ||| || | | |||||||| || || Sbjct 92717 TGCAGGCACACCTCGTCCCCAAATGTCTTCTTGTTTCTTGCTCACCATGAAGGAAGATTC 92776 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 |||||| || ||||| ||||||||||| ||||| || ||||||||| | || || Sbjct 92777 GATCGAAGGTATCTATGAGACGCTCAAAATCTGTGCTCAAATCTCCAAGACAGCAGGCGG 92836 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||| || | || | | | ||| | ||||| | || || || || || |||| Sbjct 92837 TATTGGCTTGAACATTCAC-AACATTCGTGCTAGTGGATCATACATTGCCGGCACCAACG 92895 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | || | ||| | |||| |||||||| || |||||||| ||||| || || ||| Sbjct 92896 GTTACTCCAACGGATTATTGCCCATGCTCCGTGTTTTCAACAATACGGCTCGTTATGTCG 92955 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | || || ||| ||||| ||| | ||||| || ||| | || || ||||| || | Sbjct 92956 ATCAAGGCGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACCCTGGCATGCAG 93015 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCCG 53658 ||||| | ||| | || |||| || ||| | || || || | ||| || Sbjct 93016 ACATTTTCACCTTTTTAGACTTGCGAAAAAACTTTGGTAAAGACGAAATCAGAGCT--CG 93073 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCA 53700 ||| ||||| ||||| ||| |||| || || |||||||| Sbjct 93074 TGATCTGTTCTATGCTCTCTGGGTTCCTGATCTTTTCATGCA 93115 Score = 109 bits (120), Expect = 6e-19 Identities = 267/402 (66%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 || |||||||| || || || || || |||||||||||||||| | | ||||| || Sbjct 133352 AAATACTTTACTCATGCTACACCTACATTGTTCAACGCTGGTACACCTAAACCTCAATTG 133293 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || |||||||| || ||||| || ||| ||||| ||||||||||| || || Sbjct 133292 TCTAGTTGCTTCCTTGTTCAAATGAAAGAGGACAGTATCGAAGGCATCTACGATACTATC 133233 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-T 53445 | |||||| | ||||| |||| | || ||| | || | |||||| || | | Sbjct 133232 ACCACGTGTGCTCGTATCTCAAAGTCTGCTGGCGGTGTTGGCGT-TGCTGCTCAAAAGAT 133174 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 |||| ||| | ||| || || ||||| | || |||| ||| | || || Sbjct 133173 TCGTGGCTCTGGCTCTTATATCGCAGGAACAAACGGTACCTCCAATGGCATCATTCCAAT 133114 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 |||| | ||||| || |||| || || | || | || || ||||| || ||||| || Sbjct 133113 GCTCAGAGTCTTTAATGACACTGCTCGCTTTGTGACACAAGGAGGTGGTAAACGCAACGG 133054 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 || || ||||| | || || ||||| | |||| | | || || | || |||| Sbjct 133053 TAACTTTGCTGTCTACATAGAACCTTGGCATGTCGACGTATTCGAATTCTTGGACTTGCG 132994 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||| | |||| || || |||||| || ||| |||| Sbjct 132993 CAAGAACAATGGTGCTGAGGAAATGCGCGCACGCGACTTGTT 132952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||| || | ||| ||| || ||||||||| |||| | | | | ||||||||| Sbjct 131700 TCTCAAAAAGCTATACAAGACAGTATGGGAGATTTCACAAAGAACTATTATTGACATGGC 131641 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA-TGGAGAATC 55844 ||||| | || || | || ||||| || || ||| |||| | || | || ||| | Sbjct 131640 CGCTGACAGAGGAGCCTTTATTGACCAATCTCAATCTATGAATTTGTTTACTGCCGAACC 131581 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | |||| || | || ||| ||||||||||| | |||||||||||||| ||||| | Sbjct 131580 AAACTTTGGCAAACT-GACCTCTATGCACTTTTATGCCTGGAAGAAGGGACTAAAGACTG 131522 Query 55905 GTATGTACTATCTG 55918 | ||||| ||| || Sbjct 131521 GCATGTATTATTTG 131508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACC--AGTCCCAGTCTCTGAACATCT 55832 ||||||||| |||||||||||||||||| || |||| |||| || | ||||||||| Sbjct 94170 ATTGACATGGCTGCTGATCGTGGTGCGTATATTGACCAAAGTCAAAG--TTTGAACATCT 94227 Query 55833 TCATGG-AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 | |||| ||| || | ||| ||| | | | ||||||||||| || ||| | ||| Sbjct 94228 TTATGGCTGAACCCAACTTTGG-TAAGCTCACCAGTATGCACTTTTATGGTTGGCAAAAG 94286 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||| | ||||| || ||||| || || || || || Sbjct 94287 GGATTAAAGACAGGCATGTATTACCTTCGTACACG 94321 >seq80 Length=87281 Score = 105 bits (116), Expect = 7e-18 Identities = 198/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | | ||||||||||| || | | || ||||| || ||||| || Sbjct 44569 CCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCGGGCATCAGACCACGTTTT 44628 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||||||||||| | ||||||||| ||||||||| ||||||||| |||||| Sbjct 44629 TTGAGCCAAAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACAGCAGCAAAG 44688 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGA--GCCCATTCAG 74946 || ||||| |||| || || | | | || | ||||| | ||| ||||| |||| Sbjct 44689 GCAACAAGACGTTCAGCAAAAGAACCGTTAGAGGAAATCCA--TTTGAAGGCCCAATCAG 44746 Query 74947 CTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGG 75006 | |||| |||| ||||| ||| || || || ||||| || | ||||||| | Sbjct 44747 CCTTTCTCTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTTTCTCTTGGT 44806 Query 75007 GATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 || |||| ||||||||| ||| ||| || || | ||||| Sbjct 44807 TGTCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAAT 44855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211930081000