Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq57 201 1e-46 seq10 181 1e-40 seq24 131 2e-25 seq118 96.9 4e-15 seq66 93.3 5e-14 seq15 93.3 5e-14 >seq57 Length=110979 Score = 201 bits (222), Expect = 1e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 ||| |||||||||||||||||||| ||||| || ||||| |||||| | || || ||||| Sbjct 11444 TATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACGATTACTTTAGAAGTCGAGTC 11385 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 ||| | || | ||| | || |||||||| |||||||| || |||||||| || Sbjct 11384 TTCTGACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGA 11325 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || ||||| || ||||||||||| |||||||| |||| |||||||||| ||||| Sbjct 11324 TCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTA 11265 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||||||||||| ||||||||| | ||| | ||||| || ||||| Sbjct 11264 TAACATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGTCTCCGTGGTGG 11214 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| ||| | || | ||| ||| | | || || | ||| | Sbjct 11212 ATGCAAATATTTGTCAAGACACTTGCTGGAACGACAATTTCGTTAGAAGTCAACTCATCT 11153 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | ||| | | |||| ||||||||| || | || | ||||| || | || Sbjct 11152 GATACCGTTGATATTATGAAAAGTAAAATTCAAGAAAGAGAAGACATTCCGTCAAATCAA 11093 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| |||||||| || |||||||| ||| || ||| || || ||||| Sbjct 11092 CAACGTTTAATCTTTGCTGGCAAACAACTCGAAAATGGTCATACTCTGAATGAATATAAC 11033 Query 27586 GTCCAAAAGGAATC 27599 |||||| ||||| Sbjct 11032 ATCCAAAGTGAATC 11019 >seq10 Length=205532 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| |||||||||||||| |||||| | || || || || Sbjct 110219 AATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCGAATCTTC 110278 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||||| || | |||| | ||| || ||||| |||||||| || || ||||| ||||| Sbjct 110279 TGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCA 110338 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||||||||| ||||| ||||||| |||||| | ||||| || Sbjct 110339 ACAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTGACTACAA 110398 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||||| | ||| | |||||||| ||||| Sbjct 110399 CATCCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTTCGTGGTGG 110446 >seq24 Length=153386 Score = 131 bits (144), Expect = 2e-25 Identities = 117/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 151934 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCCGGTAAA 151875 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||||| || | ||||||| | ||| |||||||| ||||||||||||| ||||| || Sbjct 151874 CAACTCGAAGACGGTCGTACCTTGAGC-GACTATAACATCCAAAAGGAATCTACTCTCCA 151816 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | |||||||| ||||| Sbjct 151815 CTTAGTTCTCCGTCTTCGTGGTGG 151792 >seq118 Length=67844 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||| || || || || ||||| || || ||||| || || Sbjct 18955 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 19014 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| ||||| || ||||| |||||||| || | ||||||| | || || || Sbjct 19015 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 19074 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || ||||| | || | |||||||| ||||| Sbjct 19075 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 19122 >seq66 Length=102801 Score = 93.3 bits (102), Expect = 5e-14 Identities = 212/316 (67%), Gaps = 11/316 (3%) Strand=Plus/Plus Query 24779 GGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTG 24838 ||| || || || || ||||| || || ||||| || | ||| | | | || || Sbjct 12759 GGAAACGACACCCTTCTATCCCCGTTCTCCTTATGGTGTAGCCAAGCTTTATGGCTATTG 12818 Query 24839 GATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAA 24898 ||| || ||||||||||| | | || | ||| || ||||| ||||| ||||| Sbjct 12819 GATTACGGTCAACTACCGTGAATCATACAACATGTTTGCCTGTAACGGTATTCTCTTCAA 12878 Query 24899 CCATGAGTCGGAGCGTCGGGGACCTGAATTTGTTACACGAAAGATTACTCTTGGTATTG- 24957 |||||| ||| ||||| || | | || ||||| |||||||||| || || | ||| Sbjct 12879 CCATGAATCGCCTCGTCGTGGTCGTACCTTCGTTACCCGAAAGATTAGTCGTGCTGTTGC 12938 Query 24958 -----ACCA-TTGGATCAAGACAAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAAC 25011 ||| |||| | | |||| | || || | || || || | ||||| || | Sbjct 12939 AGACATCCACTTGG--GACGTCAAGAGTGCC--TTTATCTCGGTAATATTGATGCTAAGC 12994 Query 25012 GTGATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATA 25071 |||||||||| ||||| || || ||||| | ||||||| |||||| || || || Sbjct 12995 GTGATTGGGGACATGCTCGTGATTATGTCGAGGGTATGTGGCTCATGCTGCAGCAAGATC 13054 Query 25072 AGCCAGAGGATTTTGT 25087 | || | |||||||| Sbjct 13055 AACCTCAAGATTTTGT 13070 >seq15 Length=177086 Score = 93.3 bits (102), Expect = 5e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 80043 CAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAG 80102 || ||| |||||||| ||||| || |||||||||||| | || | ||||||||| | || Sbjct 131508 CAAATAATACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAG 131567 Query 80103 CTTCGCAAGTGTGGGGTTCTCCA-TGAAGATGTTCAGAGACTGAGACTGACAGATGAAAG 80161 || || | || ||||| || | || | |||| ||| ||||| || || || | Sbjct 131568 -TTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCAATAAAGG 131626 Query 80162 CCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | || | || || ||||| |||||||| | |||||| ||| ||||||||||| Sbjct 131627 CTCCTCTGTCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGT 131681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306158316400