Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq57 132 4e-26 seq118 118 9e-22 seq10 118 9e-22 seq24 105 6e-18 >seq57 Length=110979 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || || || || ||| | |||||| | ||||| || | || Sbjct 11441 CATGCAAATCTTTGTCAAGACACTTACTGGAAAGACGATTACTTTAGAAGTCGAGTCTTC 11382 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || |||||||||||||||||||| ||||| || || || ||||| Sbjct 11381 TGACACTATCGACAATGTAAAACAAAAAATTCAAGACAAGGAAGGTATTCCTCCTGATCA 11322 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || || |||||| | ||||| || ||| | ||| || || Sbjct 11321 ACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGTCGTACCCTAAGCGACTATAA 11262 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| || || | |||||||| | ||| | || ||||| || Sbjct 11261 CATCCAAAAGGAATCTACTCTTCATTTGGTCCTTCGTCTCCGTGGTGGTAT 11211 >seq118 Length=67844 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| | ||||| | ||||| ||||| || ||||| || ||||| || || || ||| Sbjct 18953 TCTGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGAT 19012 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | |||||| |||||| | |||||| || ||| | |||||| Sbjct 19013 CAACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTAC 19072 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || ||| | || |||||| | ||| | || ||||| || Sbjct 19073 AACATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 19125 >seq10 Length=205532 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||||| ||||||||| | |||||| | ||||| ||| | || Sbjct 110220 ATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACGATTACTTTAGAAGTCGAATCTTCT 110279 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || | ||||| ||||| ||||||||||| ||||| || || || || ||| Sbjct 110280 GATAGTATCGAAAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAA 110339 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || |||||| | || || || || | || |||||| Sbjct 110340 CAGAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTTTGAGTGACTACAAC 110399 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 110400 ATCCAAAAGGAATCTACCCTTCACTTGGTCCTTCGTCTTCGTGGTGGTAT 110449 >seq24 Length=153386 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | ||||| | ||||| ||||| ||||||||||| ||||| || || || || Sbjct 151961 TCCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGAC 151902 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | ||||| |||||| | |||||| || ||| | ||| || Sbjct 151901 CAACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTAT 151842 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || | || || ||| | ||| | || ||||| || Sbjct 151841 AACATCCAAAAGGAATCTACTCTCCACTTAGTTCTCCGTCTTCGTGGTGGTAT 151789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915165294400