Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq57 167 5e-36 seq10 158 3e-33 seq24 140 8e-28 seq118 127 5e-24 seq15 89.7 1e-12 >seq57 Length=110979 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||||| || || |||||||||||||| || ||||| | |||||| Sbjct 11229 AGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCT 11288 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| || |||||||| |||||||||| ||||||||||| Sbjct 11289 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 11348 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || |||||||| || || ||||| |||||||| || || || | ||| |||||| Sbjct 11349 TGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCGTC 11408 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| ||||| | ||||| Sbjct 11409 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 11440 >seq10 Length=205532 Score = 158 bits (174), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | ||||| | |||||| || || || ||||||||||| || || | ||| | Sbjct 110441 ACGAAGACGAAGGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAG- 110383 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||| || || || || || || |||||||| | |||||||||||||| | | Sbjct 110382 TACGACCATCCTCAAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATAC 110323 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||||||| || |||||||| || || |||||||| | ||||| ||| || || | Sbjct 110322 CTTCCTTGTCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTA 110263 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| |||||||| || || ||||||||||| || | |||||||| Sbjct 110262 AAGTAATCGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 110217 >seq24 Length=153386 Score = 140 bits (154), Expect = 8e-28 Identities = 134/169 (79%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | ||| ||||| || || |||||||||||||| || | ||| || Sbjct 151797 ACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGCTCAA-GG 151855 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||| || || || || || |||||||| ||||||||||||||||||| | Sbjct 151856 TACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATAC 151915 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 |||||||||| || |||||||| || ||||| || |||||||| || || Sbjct 151916 CTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAACT 151964 >seq118 Length=67844 Score = 127 bits (140), Expect = 5e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| || || || ||||| ||||| ||||| | ||||| Sbjct 19117 ACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGG- 19059 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||| || || || || ||||| || || |||||||| |||||||| | | Sbjct 19058 TACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATAC 18999 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 ||||||| || ||||||||||| || || || || |||||||||||||| Sbjct 18998 CTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 18950 >seq15 Length=177086 Score = 89.7 bits (98), Expect = 1e-12 Identities = 236/356 (66%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 || ||||| | || || ||||||||| | ||||| || || ||||| || ||| Sbjct 93358 CCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGAATGG-ATT 93300 Query 178148 CCCAC-CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTT 178206 ||| ||| | ||| ||| | | |||| || ||| |||| || || || || | Sbjct 93299 ACCAGTCTCCGTTTGTGCCTCCAAAATGGCATACCACAGCTTTTGAGCCTTGATTGTTTC 93240 Query 178207 TTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGAC 178266 | | ||| |||||||| ||||| |||| ||||| | | ||||| || |||| Sbjct 93239 TCTAGCTCTTCCTTCACGTTCGTATTTTTCATAGAGAGCAACAAATTCGTCACCCCAGAC 93180 Query 178267 ATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCAC 178326 |||| | || ||||| ||||||||||| || ||| ||| | ||| | || | || Sbjct 93179 TTCATGTAATCCAGGAGCTTCATTGGGGCAAAATAGAGACCAATCACCACCGTCTCTGAC 93120 Query 178327 TCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCTCATCAG 178386 || | |||||| || |||| ||||| |||||||| | || | ||||| || Sbjct 93119 ACGCTGCATGAAAAGATCAGGAACCCAGAGAGCATAGAACAGATCACGAGCTCTGATTTC 93060 Query 178387 GTCATTTCCTCCGGGTTTTCTGGCA--TCAACAAAGTCAAAAATGTCCACATGCCA 178440 ||| || | | ||||| | ||| || | |||| |||||||| ||||||| Sbjct 93059 GTCTTTAC--CAAAGTTTTTTCGCAAGTCTAAAAAGGTGAAAATGTCTGCATGCCA 93006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143163277175