Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F002083735.1_202017-04-12] 595 sequences; 24,077,254 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10 154 3e-32 seq57 131 4e-25 seq24 93.3 1e-13 seq118 86.0 1e-11 >seq10 Length=205532 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||| ||||| || |||||||||||||| || ||||| | ||||| Sbjct 110431 AGGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAAGTACGACCATCC 110372 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || |||||||| ||||| ||||| | | ||| |||||||| ||| Sbjct 110371 TCAAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTGTCT 110312 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| |||||| | || | || || ||| || ||||| | |||||| || Sbjct 110311 TGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATCGTC 110252 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || |||||||| ||||||| |||||||| Sbjct 110251 TTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 110217 >seq57 Length=110979 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||| || ||||||||||| || ||| || || | |||||| Sbjct 11229 AGGACCAAATGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGGGTACGACCATCT 11288 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| || | || || || | | || |||||||| ||| Sbjct 11289 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 11348 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||||||||| ||| | || | |||| ||| ||| ||||| | |||||| || Sbjct 11349 TGAATTTTTTGTTTTACATTGTCGATAGTGTCAGAAGACTCGACTTCTAAAGTAATCGTC 11408 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||| ||||| Sbjct 11409 TTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 11440 >seq24 Length=153386 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || |||||||| || ||||||||||| || ||| || || | || ||||| || | Sbjct 151816 TGGAGAGTAGATTCCTTTTGGATGTTATAGTCGCTCAAGGTACGACCGTCTTCGAGTTGT 151875 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| |||||||| | || ||||| | | || |||||||| |||||||| ||| Sbjct 151876 TTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 151935 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT 152050 || ||||| | || | | |||| ||||| Sbjct 151936 TGCTTGACGTTGTCAATGGTGTCGGAACT 151964 >seq118 Length=67844 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||| ||||||||||| || || | || ||||| | Sbjct 19102 CAAG-TGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGA 19044 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || || | || || || | | ||| |||||||| ||||| | Sbjct 19043 GTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGA 18984 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT 152050 | ||||| |||||| | || | | |||| || || Sbjct 18983 TCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 18950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812003919245