Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq14 145 2e-29 seq3 138 2e-27 seq107 134 3e-26 seq41 89.7 1e-12 seq10 89.7 1e-12 >seq14 Length=659637 Score = 145 bits (160), Expect = 2e-29 Identities = 446/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Minus Query 318997 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 319056 |||||||| | | ||||||||||||||||| | ||| || || |||| | ||| Sbjct 83923 TCTTCACCAGTGTGGTAACGCCATTGGATATATTCGTTAGGGGTTTTGTCCAAGTGACGT 83864 Query 319057 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 319116 ||||| |||||||||||||| || || || || |||| ||||| || ||||| |||| Sbjct 83863 TCGATATGGTGGAAAGCATGTTGAGCGACATAGGCAATACGCAAGTTAGGATGTCTCCAG 83804 Query 319117 ACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCC 319176 ||| |||| | || || |||| || || | || ||| || | ||| || || Sbjct 83803 ACAGTACCAACCTCGGACTCGATTTCACCAGTCAACAACTTGATCAAGGTAGACTTACCA 83744 Query 319177 GCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTG 319236 |||||||| ||| | || | | | |||| || || || | |||| | | || Sbjct 83743 GCACCGTTGGGGCCAATGACGGCAACACGGGAGGCAAGAGA-ACAT-TGCATGGA-GATG 83687 Query 319237 TCAAAGATTAGTTT---TTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATG 319293 |||| | | | || || | ||| ||||||| ||| | || | ||||| | Sbjct 83686 TCAATCAGTTGCTTGCGGTCAGAACCAGGATACTGGAAATCGACGTTCTTCATCTTCAAG 83627 Query 319294 ATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTG 319353 || ||||| ||||| | ||||||| || | ||| || ||||| ||||| || || Sbjct 83626 ATTGCACGTTCCTTAGTCTTGATACCTTCCAAGAAACCAGGCTCAGGGAAAGAGAACTTG 83567 Query 319354 GTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTG-ATTCGGGACGCTTCTTCACGAACTC 319412 | | || | | || ||||||| || | | ||||| |||||| ||||| || Sbjct 83566 ATTTGAGTAGCTTCCAAGGAGTAGTAAGAGGCAGCACGAGGGAC-CTTCTTGACGAATTC 83508 Query 319413 GGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT 319472 ||||| || |||||||| ||| ||||| ||| || ||||| || || || || Sbjct 83507 GGACAAGTTACCCTTGTAGCGCTTGAGCTTATAGTTGGGCTCGTAGTGAATGATGTCGGA 83448 Query 319473 GCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG 319532 || ||| || | ||| || |||||||| || ||||| | | | ||| ||| | Sbjct 83447 ACAGACATGATCCAAGAAACCAGAGTCGTGGGAGACAATGATAGAGGTAACAGTCTTCAA 83388 Query 319533 GTTGATCAGGTATTCAATCAACCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCT 319591 | ||||| | || ||| ||||| ||| ||| | || ||||| || | Sbjct 83387 ACCAAGAAGGTAGTTCTCCAGCCAGGCAACGTT-GACAACATCCAAGTGATTGGTAGGTT 83329 Query 319592 CGT-CAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATT 319650 ||| ||| ||| || | | ||||||| | ||| ||||| |||||||| || ||||| Sbjct 83328 CGTCCAACAAG-AGGATATCAGCGTTCATCAACATAGCACGGGCAAGAGCAAGCTTCATC 83270 Query 319651 TTCCACCCTCCGGAAAG 319667 ||||| || || || || Sbjct 83269 TTCCAACCACCAGAGAG 83253 Score = 107 bits (118), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 318485 TAATGACCACAACACCTCCGCCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCT 318544 ||| || |||||||| || ||| | | ||| | || |||| || || ||| | Sbjct 84441 TAACGATGACAACACCACCACCATATTCCTTGATAGCAGTAGCCAAAGCACCAAGAGATT 84382 Query 318545 CGCGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGT-TGTTGCCATAGA 318603 | || || | | ||||| |||||||| | ||| | || ||| ||| |||| ||| | | Sbjct 84381 CACGATCCAAATAATTGGTAGGTTCGTCAAGAACAAGCATGTGAGGTCTGTT-CCACATA 84323 Query 318604 GCAGCGCCAATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGA 318663 ||||| ||||| ||||| || | |||||| || ||||| || ||||| || ||||||||| Sbjct 84322 GCAGCACCAATGACCAACTTGACCTTTTGACCACCAGAGAGGCCACGGATACGAGAATGA 84263 Query 318664 GTTGTAAATTCAGGGTCGAGCCCAACATTTGCCATATGTTCTTCCACGTTCTTTGCGGTC 318723 || | ||||| || || || ||||| | |||| || | ||| | | ||| || ||| Sbjct 84262 GTAGCGAATTCGGGTTCAAGACCAACTTCGGCCAAGTGCTTTTCAATTTCCTTGGCAGTC 84203 Query 318724 A 318724 | Sbjct 84202 A 84202 >seq3 Length=1262620 Score = 138 bits (152), Expect = 2e-27 Identities = 732/1144 (64%), Gaps = 64/1144 (6%) Strand=Plus/Minus Query 318559 TTGGTCGGTTCGTCCAAAACGATCACGTGGGGT-TGTTGCCATAGAGCAGCGCCAATAAC 318617 ||||| |||||||| | ||| | || ||| ||| |||| ||| | |||||| ||||| || Sbjct 915664 TTGGTAGGTTCGTCAAGAACAAGCATGTGAGGTCTGTT-CCACATAGCAGCACCAATGAC 915606 Query 318618 CAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAGTTGTAAATTCAGG 318677 ||| || | |||||| || ||||| |||||||| || ||||| ||||| | ||||| || Sbjct 915605 CAACTTGACCTTTTGACCACCAGAGAGACCACGGATACGAGAGTGAGTAGCGAATTCGGG 915546 Query 318678 GTCGAGCCCAACATTTGCCATATGTTCTTCCACGTTCTTTGCGGTCAGTGGC---TTGA- 318733 || || ||||| | || | || | ||| | | ||| || |||| || |||| Sbjct 915545 TTCAAGACCAACTTCAGCTAAGTGCTTTTCGATTTCCTTGGCAGTCAAAGGACGGTTGAG 915486 Query 318734 ACATACCATTTGCAACGGCTTCTTTGGTATCAATATCG--TTCAGAAGTTTTC----CGA 318787 || | | || ||| ||||| | || |||| ||||| | | ||| ||| Sbjct 915485 ACCCATC-TTGGCA---GCTTC------AGCAGCATCGACTTCAGCAATCTTCTTACCGA 915436 Query 318788 AACCATACTCCTCCAGGCGTTCG--CGGGACATCCATTGGGTAGTCTCATC-GTTTTTCC 318844 |||| | | || || || || | || || ||||| ||| | ||| | | | Sbjct 915435 AACCC-ATTTCTTCAAGC-TTGGAACGAGAGATCCA---GGTGTTGTCAACAGAGGAGCG 915381 Query 318845 ACTGAACC--------TCGTACTCGTAAGATTTTTTCAGCTTGCGGCGACCAAGAATCTT 318896 || || || ||||| ||||| |||| || ||||| || ||||||| ||| Sbjct 915380 ACCGACCCAAGAGACTTCGTATTCGTAGGATTGCTTGAGCTTACGACGACCAACAATAGC 915321 Query 318897 GTCAAGAA-----TTTTC---TTCACTCCGTCAACGACTTTAGTGTCATACATCTTCTTT 318948 |||| || ||||| |||| || ||| ||||| || | ||| |||| Sbjct 915320 TTCAACAACACGCTTTTCACCTTCAATCA--CAAAGACTT----GT--TCCATGGCCTTT 915269 Query 318949 AGTTCTTCTTCGTTGTTCTTCCTAGAAACGACGTCAAGGGTCTCTTTGTCTTCACCGGAG 319008 | | ||||||| ||| || | | || || || |||||||| | | Sbjct 915268 TGGTTTTCTTCGGCGTTGTTACGTTCATTCTTTTCGAGTTCTTCACGATCTTCACCAGTG 915209 Query 319009 GCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGG 319068 ||||||||||| || || | |||||| || |||| | ||| |||||||||||| Sbjct 915208 TGGTAACGCCATTGAATGTATTCGTTGGGGGTTTTGTCCAAGTGACGTTCGATGTGGTGG 915149 Query 319069 AAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATG 319128 |||||||| || || || || |||| ||||| || ||||| |||| ||| |||| | Sbjct 915148 AAAGCATGTTGAGCAACATAGGCAATACGCAAGTTAGGATGTCTCCAGACAGTACCAACC 915089 Query 319129 GTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCG 319188 || ||| |||| || || | || ||| || | ||| || || |||||||| Sbjct 915088 TCGGATTCGATTTCACCAGTCAACAACTTGATCAAGGTAGACTTACCAGCACCGTTGGGA 915029 Query 319189 CCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGT 319248 || | || | | | ||| || || || | |||| | | |||| | | | | Sbjct 915028 CCAATGACGGCAACACGAGAGGCAAGAGA-ACAT-TGCATGGA-GATGTCGATCAATTGC 914972 Query 319249 TT---TTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATGATGGCACGGTCC 319305 || || | ||| || || | ||| | || | ||||| ||| ||||| ||| Sbjct 914971 TTGCGGTCAGAACCAGGGTATTGGAAGTCGACGTTCTTCATCTTCAAGATAGCACGTTCC 914912 Query 319306 TTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCG 319365 || | ||||||| || | ||| || || || ||||| || | | | || | Sbjct 914911 TTAGTCTTGATACCTTCCAAGAAACCAGGTTCAGGGAAAGAGAACTTAATTTGAGTAGCT 914852 Query 319366 GTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCC 319425 | || ||||||| || | ||| |||||| ||||| ||||||| || ||| Sbjct 914851 TCCAAGGAGTAGTAAGAGGCAGCACGAGGAACCTTCTTGACGAATTCGGACAAGTTACCC 914792 Query 319426 TTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCG 319485 || || ||| ||||| ||| || ||||| || || || || || ||| || Sbjct 914791 TTATAACGCTTGAGCTTGTAGTTGGGCTCGTAGTGAATGATGTCGGAACAGACATGATCC 914732 Query 319486 AGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTAT 319545 | ||| || |||||||| || ||||| | | | | ||| ||| | | ||||| Sbjct 914731 AAGAAACCAGAGTCGTGGGAAACAATGATGGAGGTAACAGTCTTCAAACCAAGGAGGTAG 914672 Query 319546 TCAATCAACCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCTCGT-CAAGAAGCA 319603 | |||||| ||||| ||| ||| | || ||||| || |||| ||| ||| | Sbjct 914671 TTTTCCAACCAGGCAACGTT-GACAACATCCAAGTGATTGGTAGGTTCGTCCAACAAG-A 914614 Query 319604 GTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGG 319663 | | | ||||||| | ||| ||||| |||||||| || ||||| ||||| || || | Sbjct 914613 GGATATCAGCGTTCATCAACATGGCACGGGCAAGAGCAAGCTTCATCTTCCAACCACCAG 914554 Query 319664 AAAG 319667 | || Sbjct 914553 AGAG 914550 >seq107 Length=77526 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || |||||||| ||| | ||| | || |||||||||||||| || || ||| | Sbjct 39910 CTCATCGGCATGAATTCTGCCTTGATGTGCCAATACATCGAATTCGTTGCTGATCGCCTC 39851 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | ||||| ||||| | ||| || | |||| ||| || || |||| |||||||| Sbjct 39850 ATGGTTGCTCTTGGATTCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGAC 39791 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 | || || |||||||| |||||||||||||| |||||||||||| ||||||||| | Sbjct 39790 ATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGACTATCAACGT 39731 Query 230626 CCTGGTGTGATGAA 230639 ||||||| ||||| Sbjct 39730 GCTGGTGTCATGAA 39717 >seq41 Length=201167 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||||||||| | ||||||||||| || || || | ||| || ||| | || | || | Sbjct 103311 GTCTTCACCAGTAGCATAACGCCACTGAATGTATTCGTTTGGCGTCTTATCCAAGTGTTG 103370 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 |||||||| ||||| ||||| || || ||||| |||| ||| | ||| || |||||||| Sbjct 103371 TTCGATGTGATGGAAGGCATGTTGAGCAACGTAGGCAATACGTAAATTGGGGTGCTTCCA 103430 Query 319116 AACACTACC 319124 || |||| Sbjct 103431 TACCGTACC 103439 >seq10 Length=783822 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||||||||| | ||||||||||| || || || | ||| || ||| | || | || | Sbjct 589948 GTCTTCACCAGTAGCATAACGCCACTGAATGTATTCGTTTGGCGTCTTATCCAAGTGTTG 590007 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||||||||| ||||| || || || || || || |||| ||| | ||| ||||||||||| Sbjct 590008 CTCGATGTGATGGAAGGCGTGTTGAGCAACATAGGCAATACGTAAATTGGGATGCTTCCA 590067 Query 319116 AACACTACC 319124 || |||| Sbjct 590068 TACCGTACC 590076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057805215029180