Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq176 104 2e-17 seq13 89.7 4e-13 >seq176 Length=52331 Score = 104 bits (114), Expect = 2e-17 Identities = 282/431 (65%), Gaps = 27/431 (6%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || |||||||| || | ||||| || || |||||||| ||||| || |||| ||| Sbjct 28268 GGTGACCTTGGACCAGTCTACGGATTTCAATGGAGACACTTTGGCGCCAAATACGTTGAC 28209 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||| | | | ||| |||| ||||| | ||||| | ||| || || ||||| | Sbjct 28208 TGTGATACTGATTAT--ACAGGACAAGGCGTTGATCAATTACAACAAGTGATTGATACTA 28151 Query 18907 TTAAAA-CAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 | |||| ||| |||| | | | |||| ||| | || | ||||| || ||||| Sbjct 28150 TAAAAAACAATCCCACTGATCGTA-GAATCATTCTGTCAGCATGGAACCCTGCAGATATT 28092 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC------ 19019 || | |||| | || || ||||| | || ||||||||||| || | || Sbjct 28091 CCTATCATGGCTTTGCCACCTTGTCATGCTTTTTGTCAGTTTTATGTATCTAATCCACCA 28032 Query 19020 --GGTGAATTATCCTGCCAAG-------------TATACCAGAGATCGGGGGATATGGGC 19064 || | | | ||||||| | || || | || | |||||||| Sbjct 28031 CAGGATAGTGGACGTGCCAAGCTATCTTGTGTGCTCTATCAACGTTCTTGCGATATGGGA 27972 Query 19065 CTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTT 19124 || ||||| || ||||| |||||| ||||||||| | || ||| | |||||||| Sbjct 27971 CTGGGGGTTCCTTTCAATATTGCTTCTTATGCACTTTTGACACGCATGATTGCGCATGTA 27912 Query 19125 ACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAAT 19184 |||| ||| || | || || || || ||||||||||| ||| ||||| |||| || || Sbjct 27911 ACAGATCTTGAACCTGGTGAATTCATACATACAATGGGCGATACACATGTTTATGTGGAT 27852 Query 19185 CATATAGATGC 19195 ||| | || || Sbjct 27851 CATCTTGACGC 27841 >seq13 Length=664605 Score = 89.7 bits (98), Expect = 4e-13 Identities = 280/431 (65%), Gaps = 27/431 (6%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || ||||| || | ||||| || || |||||||| ||||| || |||| || Sbjct 416449 GGCGATCTTGGACCAGTCTACGGATTTCAATGGAGACACTTTGGTGCCAAATACGTTGAT 416508 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||| | | | ||| |||| ||||| || ||||| | ||| || || || || | Sbjct 416509 TGTGATGCTGATTAT--ACAGGACAAGGCATTGATCAATTACAACAAGTGATTGACACTA 416566 Query 18907 TTAAAA-CAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 | |||| ||| |||| | | | |||| ||| |||| | ||||| || ||||| Sbjct 416567 TAAAAAACAATCCCACTGATCGCA-GAATCATTCTATCAGCATGGAACCCTGCAGATATT 416625 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAA------- 19018 || | |||| |||| || ||||| | || ||||| ||||| || | || Sbjct 416626 CCTATCATGGCTTTACCACCTTGTCATGCCTTTTGTCAATTTTATGTATCTAATCCACCG 416685 Query 19019 --------CGG---TG---AATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGC 19064 ||| || | ||||| || | || || | || | |||||||| Sbjct 416686 CAGGATGGCGGACGTGCCAAGTTATCTTGTGTGCTCTATCAACGTTCTTGTGATATGGGG 416745 Query 19065 CTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTT 19124 || || || || ||||| |||||| ||||||||| | || ||| | |||||||| Sbjct 416746 CTGGGTGTTCCTTTCAATATTGCTTCTTATGCACTTTTGACACGCATGATTGCGCATGTA 416805 Query 19125 ACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAAT 19184 |||| ||| | | || || || || ||||||||||| ||| ||||| |||| || || Sbjct 416806 ACAGATCTTGATCCTGGTGAATTCATACATACAATGGGCGATACACATGTTTATGTGGAT 416865 Query 19185 CATATAGATGC 19195 ||| | || || Sbjct 416866 CATCTTGACGC 416876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399497251628370