Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq13 197 1e-45 seq176 188 5e-43 >seq13 Length=664605 Score = 197 bits (218), Expect = 1e-45 Identities = 423/628 (67%), Gaps = 32/628 (5%) Strand=Plus/Minus Query 101678 TTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCT 101737 || || || |||| ||||| ||||| | || | ||| || || ||||| || || || Sbjct 416882 TTGAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCA 416823 Query 101738 CCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATG 101797 ||||| | |||| || ||||| |||||||||| || ||||| | ||| |||||| Sbjct 416822 CCAGGATCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAATA 416763 Query 101798 TTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTT 101857 || || || || || | |||||||||| || | |||||| || ||| || | ||| Sbjct 416762 TTGAAAGGAACACCCAGCCCCATATCACAAGAACGTTGATAGAGCACACAAGATAACTTG 416703 Query 101858 ---------CCATC------------ACAGACATAAAATTGACTTAATACATGACAAGGC 101896 ||||| | | ||||||||||||| || |||||||||| Sbjct 416702 GCACGTCCGCCATCCTGCGGTGGATTAGATACATAAAATTGACAAAAGGCATGACAAGGT 416643 Query 101897 GGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCT 101956 || || |||| ||||||| |||| | ||||| || | | | || || | ||| Sbjct 416642 GGTAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGATAGAATGATTCTGCGATCA 416583 Query 101957 GTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTA 102016 || || || |||||||||| ||||||| |||| |||||| |||| |||| |||| || Sbjct 416582 GTGGGATTGTTTTTTATAGTGTCAATCACTTGTTGTAATTGATCAATGCCTTGTCCTGTA 416523 Query 102017 TAATC-GC-GCCCAA-CACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATAC 102073 ||||| || | ||| || | |||| || || || || ||||| |||||||| || Sbjct 416522 TAATCAGCATCACAATCAAC---GTATTTGGCACCAAAGTGTCTCCATTGAAATCCGTAG 416466 Query 102074 ACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTA 102133 || ||||||||||| |||||| | || | || ||| | || || | | || | | Sbjct 416465 ACTGGTCCAAGATCGCCTTCACGACGGTGAGTAAGACCCAACTTGTCGAGATATTCGCGA 416406 Query 102134 GATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTTTGCTGTCAGTAGA 102192 || || || |||||||||| | ||| | | ||| | ||||| || ||| Sbjct 416405 GAACCGTTGCCATCCCAAATCTTGACGTTTCTTTCACTTAGATGCTTTG-AGTTTGTATC 416347 Query 102193 TCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGT 102252 |||| | || ||||| | ||| ||||| | || || || | ||||| | ||| || || Sbjct 416346 TCCTTTAATGAACCAAAGCAGCTCTTCCAAGACTCCCCTGAAGAATACACGCTTTGTTGT 416287 Query 102253 TAAAAGTGGAAAT---TCATTTTCTAAA 102277 | |||||||||| |||| || |||| Sbjct 416286 CAGAAGTGGAAATATATCATCTTTTAAA 416259 >seq176 Length=52331 Score = 188 bits (208), Expect = 5e-43 Identities = 455/687 (66%), Gaps = 35/687 (5%) Strand=Plus/Plus Query 101678 TTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCT 101737 ||||| || |||| ||||| ||||| | || | ||| || || ||||| || || || Sbjct 27835 TTAAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCA 27894 Query 101738 CCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATG 101797 ||||| | |||| || ||||| |||||||||| || ||||| | ||| |||||| Sbjct 27895 CCAGGTTCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAATA 27954 Query 101798 TTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTT- 101856 || || || || || | |||||||| || | |||||| || ||| || ||||| Sbjct 27955 TTGAAAGGAACCCCCAGTCCCATATCGCAAGAACGTTGATAGAGCACACAAGATAGCTTG 28014 Query 101857 ------------TCC--------ATCACAGACATAAAATTGACTTAATACATGACAAGGC 101896 ||| || | | |||||||| |||| || |||||||||| Sbjct 28015 GCACGTCCACTATCCTGTGGTGGATTAGATACATAAAACTGACAAAAAGCATGACAAGGT 28074 Query 101897 GGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCT 101956 ||||| |||| ||||||| |||| | ||||| || ||| | || || | ||| Sbjct 28075 GGCAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGACAGAATGATTCTACGATCA 28134 Query 101957 GTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTA 102016 || || || |||||||||||||||||| |||| |||||| ||||| |||| |||| || Sbjct 28135 GTGGGATTGTTTTTTATAGTATCAATCACTTGTTGTAATTGATCAACGCCTTGTCCTGTA 28194 Query 102017 TAATCGCGCCCAACACCTTTA---TATTCTGCTCCGAAATGCCTCCACTGAAATCCATAC 102073 ||||| | ||| | | |||| || || || || ||||| |||||||| || Sbjct 28195 TAATC---AGTATCACAGTCAACGTATTTGGCGCCAAAGTGTCTCCATTGAAATCCGTAG 28251 Query 102074 ACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTA 102133 || |||||||| || |||||| | || | || ||| | || || | | || | | Sbjct 28252 ACTGGTCCAAGGTCACCTTCACGACGGTGAGTAAGACCCAACTTGTCGAGATATTCGCGA 28311 Query 102134 GATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTTTGCTGTCAGTAGA 102192 || || || |||||||||| | | | | ||| | ||||| || ||| Sbjct 28312 GAACCGTTGCCATCCCAAATTTTGATATTTCTTTCACTTAGATGCTTTG-AGTTTGTATC 28370 Query 102193 TCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGT 102252 |||| | || ||||| | ||||||||| | || || || | ||||| | || || || Sbjct 28371 TCCTTTTATGAACCAAAGCAGTTCTTCCAAGACTCCCCTGAAGAATACACGTTTTGTTGT 28430 Query 102253 TAAAAGTGGAAAT---TCATTTTCTAAACTAAACCTAGACT---GTGTTCCAAAAATACT 102306 | || |||||| |||| || |||| || | | || | | | |||||| | Sbjct 28431 CAGGAGGGGAAATATATCATCTTTTAAAGAGAATCGAAGCTGAGGAGGTGCAAAAACAGC 28490 Query 102307 CAGTGTTCCAGTCCCTGTTCTGTCATT 102333 || |||||| || || |||| ||| || Sbjct 28491 CAATGTTCCTGTGCCCGTTCGGTCCTT 28517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361245097789886