Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq4 87.8 2e-12 >seq1 Length=2399970 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || || ||||| ||||| ||||| | Sbjct 341873 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 341814 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || ||||| || ||| | ||||||||||| ||||| || Sbjct 341813 AGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGG 341754 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||||| || || | ||| | ||||| | || | Sbjct 341753 ATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACT 341694 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||||| ||||||||||| | || || || || ||||||||||| Sbjct 341693 TCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATTTT 341644 >seq4 Length=1094480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| || |||||||| ||||||||||| || || || | || Sbjct 349644 AGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCT 349585 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || ||||| || ||| | || || | || || || || | ||||||||||| Sbjct 349584 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 349525 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||||||| || | | ||| ||| ||| | || ||| | ||||| ||| Sbjct 349524 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTC 349465 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCTTATAAA 21192 || || || | || |||||||| |||||||| || || ||||||| Sbjct 349464 TTTCCAGTAAGTGTCTTGACAAAGATTTGCATGATGTAT---TTATAAA 349419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422252067250376