Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq107 104 2e-17 seq1 100 3e-16 seq9 84.2 2e-11 >seq107 Length=77526 Score = 104 bits (114), Expect = 2e-17 Identities = 217/321 (68%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| || || ||||| || || ||||| || ||||||| || || || || || Sbjct 40177 GAGCGTCTTGTTGCCTTTGCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCC 40118 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || ||||||||||||||||| || | ||||| || |||| |||||||| || | ||| Sbjct 40117 ATTTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATC 40058 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT-TTGGTGCA 117213 | | || || || || ||| |||||||| ||| | | || | ||| || || | Sbjct 40057 TGTCGTGATGAAGGCCTTCATACTGACTTTGCTTGTCTTTTATTTACCCATCTTCGT-AA 39999 Query 117214 GCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG 117273 ||| || ||| | ||||||| ||| ||| || || || ||| ||| || ||| Sbjct 39998 GCGTCCTAGCCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAGGA 39939 Query 117274 CTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCA 117333 || | || || || || || || ||| | || | |||| | ||||| || Sbjct 39938 ATTTTTGACGGATGCTCTTCCCGTTGCTCTCATCGGCATGAATTCTGCCTTGATGTGCCA 39879 Query 117334 ATACATCGAGTTCGTCGCCGA 117354 ||||||||| ||||| || || Sbjct 39878 ATACATCGAATTCGTTGCTGA 39858 >seq1 Length=2399970 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| |||||||| || || || ||||| || || || | || |||||| | Sbjct 341643 AAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATC 341702 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || || | ||| ||||| |||| |||| || || || || ||||| | || Sbjct 341703 TTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGA 341762 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || |||| |||| || || ||||| || || || | || || ||| ||||| Sbjct 341763 CCAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTA 341822 Query 40866 CAACATCCAGAAGGA 40880 ||||||||| || || Sbjct 341823 CAACATCCAAAAAGA 341837 >seq9 Length=817392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| |||| |||| ||||| || || || || | ||||| ||||| || || Sbjct 168713 AACG-TCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTAT 168655 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || ||||| || || |||| || ||| | | ||||||||||||||| ||||| Sbjct 168654 CTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGA 168595 Query 40881 GGCCACGCTGCATCTAGT 40898 | || || || |||| Sbjct 168594 ATCTACTCTCCACTTAGT 168577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210273827360