Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq176 165 6e-36 >seq176 Length=52331 Score = 165 bits (182), Expect = 6e-36 Identities = 431/654 (66%), Gaps = 29/654 (4%) Strand=Plus/Plus Query 97000 TTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGT--AAGCTGCTCTGTGAGAGCATCAATGT 97057 |||| || ||||||||| |||| ||| ||| || ||| | | || || |||| | Sbjct 27793 TTTAAAGTAGGGAAAGGCTTGGG--TTCACGTTGAACCTGTTGCTTAAGTGCGTCAAGAT 27850 Query 97058 GATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAG 97117 ||| |||||||| || | ||| || | || || || ||||| ||||| | | ||| | Sbjct 27851 GATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCACCAGGTTCAAGATCTG 27910 Query 97118 TGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTA 97177 | ||||| || ||||| | || || || | ||| |||||| || ||||| ||||| | Sbjct 27911 TTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAATATTGAAAGGAACCCCCA 27970 Query 97178 GTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTT-------------TCC- 97223 |||||||||| || | |||||| | | ||| || ||||| ||| Sbjct 27971 GTCCCATATCGCAAGAACGTTGATAGAGCACACAAGATAGCTTGGCACGTCCACTATCCT 28030 Query 97224 -------ATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTG 97276 || | | ||||||||||||| || ||||||| || ||||| ||||| | | Sbjct 28031 GTGGTGGATTAGATACATAAAACTGACAAAAAGCATGACAAGGTGGCAAAGCCATGATAG 28090 Query 97277 GAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTA 97336 ||| |||| ||||| || ||| | ||||| | ||| || || || | | || Sbjct 28091 GAATATCTGCAGGGTTCCATGCTGACAGAATGATTCTACGATCAGTGGGATTGTTTTTTA 28150 Query 97337 TGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGA 97395 | |||| ||| | || | ||||||||||||||||| ||| ||||| || || Sbjct 28151 TAGTATCAATCACTTGTTGTAATTGATCAACGCCTTGTCCTGTATAATCAGTATCACAGT 28210 Query 97396 CCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 | | |||| || ||||| || |||||||| ||||| || || ||||||||||| ||| Sbjct 28211 CAACG-TATTTGGCGCCAAAGTGTCTCCATTGAAATCCGTAGACTGGTCCAAGGTCACCT 28269 Query 97456 TCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAA 97515 || | | | | ||| | ||| || | ||| | ||| || || |||||||| Sbjct 28270 TCACGACGGTGAGTAAGACCCAACTTGTCGAGATATTCGCGAGAACCGTTGCCATCCCAA 28329 Query 97516 ATGTGCACACCAGATGCTGCAAGCT-CTTTGCTGTCAGTAGATCCTCTGATAAACCACAA 97574 || | | | | | || | ||||| || ||| |||| | || ||||| | Sbjct 28330 ATTTTGATATTTCTTTCACTTAGATGCTTTG-AGTTTGTATCTCCTTTTATGAACCAAAG 28388 Query 97575 CAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 || |||||||| || || || | ||||| | || ||||| | ||| ||||| Sbjct 28389 CAGTTCTTCCAAGACTCCCCTGAAGAATACACGTTTTGTTGTCAGGAGGGGAAA 28442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346778142168020