Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-30 seq1 138 2e-27 seq13 127 3e-24 seq176 118 2e-21 seq27 114 2e-20 >seq4 Length=1094480 Score = 147 bits (162), Expect = 3e-30 Identities = 176/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 124533 AATACA--ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTG 124590 |||||| |||||||| ||| | |||||||| || || || || || ||| |||| ||| Sbjct 349425 AATACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTG 349484 Query 124591 AAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCAC 124650 || | ||| || || ||| ||||||| || |||||||| || |||||||| || | Sbjct 349485 AATCTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTC 349544 Query 124651 CTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAG 124710 ||||||||||| | || || ||||| || |||||| | || ||| | || || || | Sbjct 349545 CTGATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCG 349604 Query 124711 ATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| || ||||| ||||| ||| | || ||||| | ||| | || |||||||| Sbjct 349605 ACTATAACATCCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGGTAT 349662 >seq1 Length=2399970 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || ||||||| || || ||||| || || ||| |||| | ||| | Sbjct 341646 AATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATCTTC 341705 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || || ||||||||||| |||||||| || ||||| || Sbjct 341706 TGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 341765 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || ||||| ||||| || |||||| | |||||| | || || | || || || Sbjct 341766 ACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTACAA 341825 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || ||||| | ||| | || |||||||| Sbjct 341826 CATCCAAAAAGAATCTACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 341876 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | || |||| | Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | || || || ||||||||||| |||||||| || ||||| ||| Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || |||||| | || || |||| || || |||||||| Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||| ||| | || ||||| | ||| | || || ||| Sbjct 342525 ATTCAAAAAGAATCTACTCTTCACCTGGTTCTTCGTCTTCGTGGCGGT 342572 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| | || || || || ||||| || |||||||| || ||||| || ||| | |||||| Sbjct 342189 AATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTCTTATT 342248 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 || || || |||||| | || ||| | || || | || || || || ||||||||| Sbjct 342249 TTCGCTGGTAAACAACTTGAAGATGGCCGTACTCTNNNNGACTACAACATCCAAAAAGAA 342308 Query 124731 TCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||| | || ||||| | ||| | || |||||||| Sbjct 342309 TCTACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 342346 >seq13 Length=664605 Score = 127 bits (140), Expect = 3e-24 Identities = 332/502 (66%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 |||||||| | || |||||||| | || || || || ||| ||||| | |||| Sbjct 416943 ATCTACTTTACGGTTGATTTTTAAAGTAGGGAAAGGTTTGGGTTCACGTTGAACCTGTTG 416884 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 || | | | | || ||||| ||||| | ||||| || || || |||| || ||||| Sbjct 416883 CTTGAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTC 416824 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAAC 205487 | || | | || |||| ||| |||||||| ||||| | |||| ||||| Sbjct 416823 ACCAGGATCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAAT 416764 Query 205488 ATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATG-TAAGAT 205546 ||| || || ||||| | ||||||||| || | |||||| | ||| | ||| | Sbjct 416763 ATTGAAAGGAACACCCAGCCCCATATCACAAGAACGTTGATAGAGCACACAAGATAACTT 416704 Query 205547 ---ATTT-----ATT---------ATTAATTACATGAAATTGTACAAAACA-ATGACAAG 205588 | | || |||| ||||| |||||| |||||| |||||||| Sbjct 416703 GGCACGTCCGCCATCCTGCGGTGGATTAGATACATAAAATTG-ACAAAAGGCATGACAAG 416645 Query 205589 GTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAG 205648 |||||| | |||| | || |||| ||| ||||| |||| || || || | | | Sbjct 416644 GTGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGATAGAATGATTCTGCGA- 416586 Query 205649 ATTCAG---GtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGAT 205705 |||| | || |||||||| | | || | ||| ||||||||||| ||||| Sbjct 416585 --TCAGTGGGATTGTTTTTTATAGTGTCAATCACTTGTTGTAATTGATCAATGCCTTGTC 416528 Query 205706 TTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCAT 205765 |||||||| | ||| ||||| ||||| |||||||| || | ||||||||| || | Sbjct 416527 CTGTATAATCAGCATCACAATCAACGTATTTGGCACCAAAGTGTCTCCATTGAAATCCGT 416468 Query 205766 AAACTGGACCTAAATCACCTTC 205787 | ||||| || | ||| ||||| Sbjct 416467 AGACTGGTCCAAGATCGCCTTC 416446 >seq176 Length=52331 Score = 118 bits (130), Expect = 2e-21 Identities = 326/501 (65%), Gaps = 24/501 (5%) Strand=Plus/Plus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 |||||||| | || |||||||| | || || || || ||| ||||| | |||| Sbjct 27774 ATCTACTTTACGGTTGATTTTTAAAGTAGGGAAAGGCTTGGGTTCACGTTGAACCTGTTG 27833 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 || | | | | || ||||| ||||| | ||||| || || || |||| || ||||| Sbjct 27834 CTTAAGTGCGTCAAGATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTC 27893 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAAC 205487 | |||| | || |||| ||| |||||||| ||||| | |||| ||||| Sbjct 27894 ACCAGGTTCAAGATCTGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAAT 27953 Query 205488 ATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACAT-------------TT 205534 ||| || || || || | |||||||| || | |||||| | || Sbjct 27954 ATTGAAAGGAACCCCCAGTCCCATATCGCAAGAACGTTGATAGAGCACACAAGATAGCTT 28013 Query 205535 GACATGTAAGATATTTATT-----ATTAATTACATGAAATTGTACAAAACAATGACAAGG 205589 | || || ||| | |||| ||||| ||| || |||| ||||||||| Sbjct 28014 GGCACGTCCACTATCCTGTGGTGGATTAGATACATAAAACTGACAAAAAGCATGACAAGG 28073 Query 205590 TGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGA 205649 ||| | | |||| | || |||| ||| ||||| |||| | || || |||| Sbjct 28074 TGGCAAAGCCATGATAGGAATATCTGCAGGGTTCCATGCTGACAGAATGAT---TCTACG 28130 Query 205650 TTCAG---GtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATT 205706 |||| | || |||||||| ||| || | ||| ||||||||||| ||||| Sbjct 28131 ATCAGTGGGATTGTTTTTTATAGTATCAATCACTTGTTGTAATTGATCAACGCCTTGTCC 28190 Query 205707 TGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATA 205766 |||||||| ||||| |||| ||||| || ||||| || | ||||||||| || || Sbjct 28191 TGTATAATCAGTATCACAGTCAACGTATTTGGCGCCAAAGTGTCTCCATTGAAATCCGTA 28250 Query 205767 AACTGGACCTAAATCACCTTC 205787 ||||| || | |||||||| Sbjct 28251 GACTGGTCCAAGGTCACCTTC 28271 >seq27 Length=327670 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || |||||||| |||||||| || |||||||| Sbjct 85757 TGACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCA 85816 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || ||||| || || |||||| | || || |||| || || ||||| || Sbjct 85817 ACAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAA 85876 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||||||| ||||| || | || |||||| | ||| | || |||||||||| Sbjct 85877 CATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTATTA 85929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442911724800