Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq218 89.7 6e-13 seq7 89.7 6e-13 seq225 87.8 2e-12 seq48 87.8 2e-12 seq4 87.8 2e-12 seq1 87.8 2e-12 seq578 86.0 7e-12 >seq218 Length=45545 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 17164 TCTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACT 17223 Query 60125 ATACTACCGAGGAT 60138 |||||||| | ||| Sbjct 17224 ATACTACCAAAGAT 17237 >seq7 Length=1020296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 575817 TCTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACT 575876 Query 60125 ATACTACCGAGGAT 60138 |||||||| | ||| Sbjct 575877 ATACTACCAAAGAT 575890 >seq225 Length=43411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 1336 CTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACTA 1277 Query 60126 TACTACCGAGGAT 60138 ||||||| | ||| Sbjct 1276 TACTACCAAAGAT 1264 >seq48 Length=181276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 126340 CTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACTA 126399 Query 60126 TACTACCGAGGATTGAAT 60143 ||||||| | || || || Sbjct 126400 TACTACCAAAGACTGCAT 126417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 137364 CTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACTA 137305 Query 60126 TACTACCGAGGATTGAAT 60143 ||||||| | || || || Sbjct 137304 TACTACCAAAGACTGCAT 137287 >seq4 Length=1094480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 360219 CTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACTA 360278 Query 60126 TACTACCGAGGAT 60138 ||||||| | ||| Sbjct 360279 TACTACCAAAGAT 360291 >seq1 Length=2399970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||| || |||||| || ||| || |||| || || || ||||||||||| Sbjct 342535 TCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAA 342476 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || || ||||| | || | | ||||| || || ||||| |||| | Sbjct 342475 ATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTT 342416 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | ||| || || || || | |||||||| || || || || ||||| ||| Sbjct 342415 TCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACA 342356 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 342355 AAGATTTGCAT 342345 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| || ||||| |||| ||||| || | || || || || |||||||| || Sbjct 341837 TCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAG 341778 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||| ||| ||||| | || | | ||||| || || ||||| |||| | Sbjct 341777 ATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTT 341718 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | || ||||| || || | || || || ||||| || || |||||||| Sbjct 341717 TCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACG 341658 Query 43173 AAGATTTGCATTTTT 43187 ||||||||||||||| Sbjct 341657 AAGATTTGCATTTTT 341643 >seq578 Length=8452 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| | ||| |||||| |||||| ||||| |||||||||||||||| ||||| ||||||| Sbjct 3313 CTCTTTGGCGGGGAATTGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAACCACTA 3372 Query 60126 TACTACC 60132 ||||||| Sbjct 3373 TACTACC 3379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571807693260080