Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq107 181 1e-40 seq17 129 5e-25 >seq107 Length=77526 Score = 181 bits (200), Expect = 1e-40 Identities = 484/728 (66%), Gaps = 19/728 (3%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || |||||||| || || || |||| || | ||||||| || || ||| | || Sbjct 39857 ATCAGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGCAAC 39916 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 |||| |||| | |||||||| |||| ||| || | || || || | ||| || | | Sbjct 39917 GGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATCCTT 39976 Query 11584 TATAACTTCCTTAGAT-GGTGGATGTAATAA-ATGTTTAAACATTAAACACGCAAAATCA 11641 | ||| || | | || | | || || ||| |||| | | ||| ||||| ||| Sbjct 39977 GACGCGTTC-TTGGCTAGGACGCT-TACGAAGATGGGTAAATAAAAGACAAGCAAAGTCA 40034 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 ||| | ||||| || | || || | |||||| ||||| || || |||||||| Sbjct 40035 GTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAA 40094 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| || | |||||| || | |||||| |||||||| ||||| || || || ||| Sbjct 40095 CCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGACA 40154 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTGCTAGATATCCATTTTCTGG 11819 || ||||| || || | | || || | ||| ||| || ||||| || || Sbjct 40155 GCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACC--GTTAGAGGAAATCCACTTGAAGG 40212 Query 11820 CCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT 11879 |||||||||| || |||| | || || || || ||||| ||| | |||||| Sbjct 40213 CCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGA---GCATTT 40269 Query 11880 -TTTCTATA--TTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936 ||||| | |||||| | | ||| || || || || | ||| || |||||| |||| Sbjct 40270 CTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 40329 Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996 | ||||| || |||||||| |||||||||||| || || | | || || || Sbjct 40330 TGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCAT 40389 Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 || |||| ||| | || || ||||| ||||| ||||| | ||||| || || | Sbjct 40390 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCA 40449 Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT----TTATCCCAATCATCTAAA 12112 | | |||||| | ||||| ||| | | || || |||||||||| | | Sbjct 40450 AGACGCGAGAGATAAAGAAGCGTTCGT-TTTCGGTCATCTTGTTTTCCCAATCATGAAGA 40508 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 || || ||||| | ||||||| | |||||||| || | | || ||||| | | Sbjct 40509 TCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATAGAAT 40568 Query 12173 TTCCAGAT 12180 | |||||| Sbjct 40569 TGCCAGAT 40576 >seq17 Length=565816 Score = 129 bits (142), Expect = 5e-25 Identities = 470/728 (65%), Gaps = 17/728 (2%) Strand=Plus/Minus Query 36828 TCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGT 36887 ||| | ||| ||||| ||||| |||| ||| |||| | ||||| |||||| ||| Sbjct 415982 TCTTAAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGT 415923 Query 36888 CAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAA 36947 |||||| | | | || | | || | | |||| |||||| ||| || ||||| Sbjct 415922 CAGTTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAA 415863 Query 36948 CGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTT 37007 || ||||| || || ||||| || | |||| | |||| || |||||||| || ||||| Sbjct 415862 AGCTCCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGTTTT 415803 Query 37008 ATATATTTGTTTTATATTATCTGGTAAATCTA--AAT--GTTGAATAGAACCATTATGTA 37063 |||| | ||| | || ||| || || | | ||| |||| ||| ||| ||| Sbjct 415802 GTATAGCTTTTTGAGATCATCAGG-AATGCCAGGAATACGTTGGATACTACCGCCATGAG 415744 Query 37064 ACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAA 37121 | || | ||||| |||| || |||||| | || | | | || || || |||| Sbjct 415743 CAATCATCATGTTCTTGATGTTATCATTCCATAAAT--CGAGCTCAATGAGGTCATTCAA 415686 Query 37122 TAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCT 37181 || ||| | || || | || || || ||| | || | | ||||| |||||||| Sbjct 415685 TAAGTGCTGGTTGACTATTTGGAATTCACCACTTTGAACACGACGCGTATAAATATTGCT 415626 Query 37182 AGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCAT 37241 ||| || || || | | | || ||||| | ||||||||| || ||||||||||| Sbjct 415625 AGTGTAAGGCTCGAAGCATTCGTTATTGCCCAATATTTGACTAGTGCTAGCAGTAGGCAT 415566 Query 37242 TGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATT 37301 || || | ||||| || | | |||| | | || || | | | | ||| Sbjct 415565 AGGAGCAACAAGAAGAGAGTTACGGACACCATATTTCTTGATATTGGCTCTCAAGGTATT 415506 Query 37302 CCAATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAATACCTT 37357 |||||| | || | | | |||| | ||| | ||| | ||| |||||||||| Sbjct 415505 CCAATC---GAGATGT-TCCGAGCCTTTGACATTCCATAAATCGTGTTGAAGAATACCTT 415450 Query 37358 TACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAAC 37417 ||| | || || | | || |||||||| ||||| | ||| || || || || Sbjct 415449 GACTTACAGGTGAGCCTTCGTAGGTCTCATAGGGTCCCTGTTCTTTTGCAAGCTCACACG 415390 Query 37418 TAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTT 37477 || ||||| || ||| |||| ||| |||||||||| | | | || ||| |||| Sbjct 415389 AAGCCTCTAGAGCAGCAAAATAAATTCTTTCGAAAATATCTCTGTTCAATTGAGCAGCTT 415330 Query 37478 CTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGA 37537 | ||| || | ||| | || || ||||| ||||||| | || ||||| |||| Sbjct 415329 CAGGAGAATCAAACGGATAACGCATCAAGATAAATGCATCAGCAAGCCCTTGAACGCCGA 415270 Query 37538 TACCTATG 37545 ||| ||| Sbjct 415269 GACCGATG 415262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468516682807840