Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq107 102 6e-17 >seq107 Length=77526 Score = 102 bits (112), Expect = 6e-17 Identities = 367/558 (66%), Gaps = 27/558 (5%) Strand=Plus/Minus Query 22348 TACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGATGTA 22407 || ||||| || | || || |||||||| | ||| || | ||| | || | ||| | Sbjct 40564 TATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTGAGCAAGGATCTT 40505 Query 22408 CGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTCATGTCTCACATACTGGCA 22467 | ||||| | | || ||||||| || ||| || || |||| | | |||| Sbjct 40504 CATGATTGGGAAAACAAGATGACCGAAAACGAACGCTTCTTTATCTCTCGCGTCTTGGCC 40445 Query 22468 TTCTTTGCAATGG--CAGATGGCATTGTAGGCGACAACCTTGTGTGCAA---TTTCGCAA 22522 |||||||| ||| ||||||||||||| || ||| ||| || ||| ||| | | Sbjct 40444 TTCTTTGC--TGGTTCAGATGGCATTGTTAATGAAAAC-TTG-GTTCAAAACTTTTGTGA 40389 Query 22523 AAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAA 22582 ||| | | | ||||| ||||| | | ||||||||| ||||| | || |||| Sbjct 40388 T-GAAGT---CAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAA 40333 Query 22583 ATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAGAATCAAG 22642 | || || || |||| || | || ||||| ||| ||| || | ||||| || |||| Sbjct 40332 ACATTCACGCAGAAACTTACAGTCTTTTGATTGACAC-TTA-TATC-AAAGATAACCAAG 40276 Query 22643 CC---GCATTG---TTTTCAGCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGT 22696 | | || ||||| || ||| ||| || ||| | ||| ||||| | | Sbjct 40275 AGAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAAAGAAAGGCTGATT 40216 Query 22697 GGGC-TGCACAATGGCTGAATGCCACACATAAGTCTATCGCAACACGTCTCTTGGCCTTT 22755 |||| | || | ||| | | || | | ||| | || ||||| | |||||| Sbjct 40215 GGGCCTTCA-AGTGGAT---TTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTT 40160 Query 22756 GCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAA 22815 || ||||| ||||| || | || ||||| || ||||| |||| || ||||| |||||| Sbjct 40159 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATTTTTTGGCTCAAGAAA 40100 Query 22816 CGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTA 22875 ||| | ||||| || ||| | || ||| || ||||| | ||||| ||||| || Sbjct 40099 CGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTT 40040 Query 22876 CACTGTGACTTTGCTTGT 22893 || ||||||||||||| Sbjct 40039 CATACTGACTTTGCTTGT 40022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356227582546558