Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq4 116 4e-21 seq17 111 2e-19 seq47 104 2e-17 seq27 102 8e-17 >seq1 Length=2399970 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | ||| | ||||| ||||| |||||||||||||||||||| Sbjct 342574 TGACCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCA 342515 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| || | ||||||||| ||||||||||| | || |||||||| || || ||| Sbjct 342514 CTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGA 342455 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||| || || || ||||| || | | ||| | | |||| | ||| Sbjct 342454 GGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCA 342395 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||| | ||||| || || | || || || || ||||||||| Sbjct 342394 ACTTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCATA 342344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||| |||||||| ||||| || || Sbjct 342343 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNN 342284 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || ||||||||||| | || ||||||||||| || ||||| Sbjct 342283 AGAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGA 342224 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||| ||||| ||| ||||| || Sbjct 342223 ATACCTTCCTTGTCTTGGATCTTTTGCTT 342195 >seq4 Length=1094480 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| ||||| || ||||| |||||||| ||||| Sbjct 349659 CCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTT 349600 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||| |||||||||||| |||| |||||||| ||||| ||||| Sbjct 349599 AGAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGA 349540 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| || |||||||||| | || | ||||| | | || || Sbjct 349539 ATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACT 349480 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || || || |||||||| Sbjct 349479 TCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 >seq17 Length=565816 Score = 111 bits (122), Expect = 2e-19 Identities = 574/896 (64%), Gaps = 21/896 (2%) Strand=Plus/Plus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 ||||| || |||||||| || || || |||||| || | |||| || ||||| Sbjct 455359 GCAATGGAGGCCAAGTTACAGACAGCGACTTCGTCAGGACTCGAGTATTCAACAATTTCT 455418 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAA 153752 | ||||| ||||||||||| ||| || | || ||||| || || | ||||||| Sbjct 455419 GTACACAGGTTGCTGCATTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAA 455478 Query 153753 GCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGC 153812 || ||||| || || ||| | || | || || || | |||| || | ||| | | | Sbjct 455479 GCATCCTTATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCCTCCAAAATGGCATAC 455538 Query 153813 ATCAA--TGTGACCGCGGGCATTTGATCGCGAAACTGGCCCTTGTC-TTCGTAGTGTTTG 153869 || | ||| | | ||| || | | || |||| | |||||| | || Sbjct 455539 CACAGCTTTTGAGCCTTG--ATTGTTTCTCTAG-CTCTTCCTTCACGTTCGTATTTTTCA 455595 Query 153870 TACC-AGTATTCAAACTCATCACC--AAACGTATTGTTAAGCTCGGGACATTCGTTGGGA 153926 || || | ||||||||||||| ||| | ||| || | | ||| || |||||| Sbjct 455596 TAGAGAGCAA-CAAACTCATCACCCCAAATTTCATGT-AATC-CAGGAGCCTCATTGGGA 455652 Query 153927 CACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCAT 153986 || | ||| ||||| ||| ||| || || |||| || | ||| |||| ||| Sbjct 455653 CAAAACAGAGACCAATCACCACCGTCTCTGACACGCTGCATGAAGAGATCAGGAATCCAG 455712 Query 153987 AGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGT 154046 || || | | ||| ||||| ||| | | || || |||||| |||| |||| | | Sbjct 455713 AGAGCATAGAACAGATCGCGAGCTCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAATCT 455772 Query 154047 AAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGC 154106 || | | | ||||| |||||| ||||||| ||| | ||| ||||| ||| Sbjct 455773 AAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGT 455832 Query 154107 TTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGC 154163 || ||||| |||| || | ||| || ||||||||||||| || |||||||| || Sbjct 455833 TTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAGT 455892 Query 154164 AGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCTGTTGCGGCCTCGAACGCTGTT 154222 | ||| ||| | |||||| || ||| | || | | | |||| | ||| Sbjct 455893 AATCCGTTGGAGTAACCGTTGGTGCCGGCAATATATGAT-CCACTAGCACGAATGTTGTG 455951 Query 154223 TACGTTTAATCCAATACCGCC-GCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGT 154281 | ||| || ||||| ||||| || || |||||||| || || || | || | Sbjct 455952 AATGTTCAAGCCAATGCCGCCTGCTGT-CTTGGAGATTTGAGCACAGATTTTGAGCGTCT 456010 Query 154282 TATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCG 154341 ||||||||| || ||| | |||||| | | ||| || ||| ||| || | Sbjct 456011 CATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATTTGGG 456070 Query 154342 GAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTA-CATCTTTGTGCTC 154400 || || ||||| ||| ||| | || || || ||||| ||| | |||||| | | Sbjct 456071 GACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAGTATCTTT-CGGAC 456129 Query 154401 AAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATA 154460 | || || || | || || || |||||| ||| |||| |||||| | || | | Sbjct 456130 ATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATTGCAACA 456189 Query 154461 CGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAATTTTTATCAGGTA 154516 |||||| || |||||| | ||| |||| || ||| ||| || | ||||| Sbjct 456190 CGCATGATCAAATGTTGAGGACGTTCAGCAATCTTGCCGTCAATCTTGAGAAGGTA 456245 >seq47 Length=189370 Score = 104 bits (114), Expect = 2e-17 Identities = 595/932 (64%), Gaps = 21/932 (2%) Strand=Plus/Plus Query 153633 GCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCC 153692 ||||| || |||||||| || || || ||| || || | |||| || ||||| Sbjct 152612 GCAATGGAGGCCAAGTTACAGACAGCGACTTCATCAGGACTCGAGTATTCAACAATTTCT 152671 Query 153693 GCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAA 153752 | ||||| ||||||||| || ||| || | || ||||| || || | ||||||| Sbjct 152672 GTACACAGATTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACAA 152731 Query 153753 GCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAG--TAC 153810 || ||||| || || ||| | || | || || || | |||| ||| | ||| | ||| Sbjct 152732 GCATCCTTATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCTTCCAAAATGGCATAC 152791 Query 153811 GCATCAATGT-GACCGCGGGCATTTGATCGCGAAACTGGCCCTTGTC-TTCGTAGTGTTT 153868 ||| | | || | | ||| || | | || |||| | |||||| | || Sbjct 152792 -CATAGCTTTTGAGCCTTG--ATTGTTTCTCTAG-CTCTTCCTTCACGTTCGTATTTTTC 152847 Query 153869 GTACC-AGTATTCAAACTCATCACCAAACGTATTGT-TAAGCTCGGGACATTCGTTGGGA 153926 || || | ||||||| ||||| | | | | ||| | | ||| ||| |||||| Sbjct 152848 ATAGAGAGCAA-CAAACTCGTCACCCCAGATTTCATGTAATC-CAGGAGCTTCATTGGGA 152905 Query 153927 CACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCAT 153986 || | ||| ||||| ||| ||| || || |||| || | ||| |||| ||| Sbjct 152906 CAAAACAGAGACCAATCACCACCGTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAG 152965 Query 153987 AGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGT 154046 || || | | ||| || || ||| | | || || |||||| |||| || | || | Sbjct 152966 AGAGCATAGAACAGATCACGAGCTCTGATTTCGTCTTTGCCAAAGTTTTTTCGTAAGTCT 153025 Query 154047 AAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGC 154106 || | | | || || |||||| ||||||| ||| | ||| ||||| |||| Sbjct 153026 AAAAAGGTGAAAATATCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGC 153085 Query 154107 TTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGC 154163 || ||||| |||| || | ||| || ||||||||||||| || |||||||| | Sbjct 153086 TTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAAT 153145 Query 154164 AGACCGCTGGCGGTACCGTTTGTAGATTTAATCT-TGCTGTTGCGGCCTCGAACGCTGTT 154222 || ||| ||| | |||||| ||| ||| | || | | | |||| | ||| Sbjct 153146 AGTCCGTTGGAGTAACCGTTGGTACCGGCAATGTATGAT-CCACTAGCACGAATGTTGTG 153204 Query 154223 TACGTTTAATCCAATACCGCC-GCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGT 154281 | ||| || |||||||| || || || |||||||| || || || | || | Sbjct 153205 AATGTTCAAGCCAATACCACCTGCTGT-CTTGGAGATTTGAGCACAGATTTTGAGCGTCT 153263 Query 154282 TATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCG 154341 ||||||||| || ||| | |||||| | | ||| || ||| |||||| | Sbjct 153264 CATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGG 153323 Query 154342 GAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTA-CATCTTTGTGCTC 154400 || || ||||| ||| ||| | || || || ||||| || | |||||| | | Sbjct 153324 GACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTTCAG-AC 153382 Query 154401 AAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAAGATACCTAGAGCTATA 154460 | || || || | || || || |||||| ||| |||| |||||| | || | | Sbjct 153383 ATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATCGCAACA 153442 Query 154461 CGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAATTTTTATCAGGTAGCCA 154520 ||||| || |||||| | ||| |||| || ||| ||| || | ||||| | Sbjct 153443 CGCATAATCAAATGTTGAGGACGTTCAGCAATCTTGCCGTCAATCTTGAGGAGGTAAGAA 153502 Query 154521 TTTTTGAGCGTTTGATATCCAAAATAATTGTA 154552 || ||| |||| | ||||| | ||||| Sbjct 153503 CGTTCGAGGGTTTTGAAACCAAAGAAGTTGTA 153534 >seq27 Length=327670 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| || ||||||||||| ||||| ||| Sbjct 85924 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 85865 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||| |||||||| || | || |||||||| ||||| ||||| Sbjct 85864 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 85805 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||| || || ||| ||||| || Sbjct 85804 ATACCTTCCTTATCTTGGATCTTTTGCTT 85776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055405691200