Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq107 183 3e-41 >seq107 Length=77526 Score = 183 bits (202), Expect = 3e-41 Identities = 544/835 (65%), Gaps = 8/835 (1%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| ||| || | |||||||| ||||| || || |||| || || || | || Sbjct 39734 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 39793 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| || | ||| | | || || | || || | | | | Sbjct 39794 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAG 39853 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 | |||||||| || || || ||||| |||| || || ||||||| || || || Sbjct 39854 GCGATCAGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGC 39913 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 || |||| || || |||||||| | ||| || ||||| || || ||| Sbjct 39914 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 39973 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 ||| | || | |||| | | ||||| |||| | | ||| ||||| || Sbjct 39974 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 40033 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 | ||||||||| ||||| | || || | ||| || ||||| || || |||||||| Sbjct 40034 AGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAA 40093 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || ||||| || | |||||| || | ||| || || || || ||||| || || || || Sbjct 40094 ACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAGATACCTTCGAC 40153 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || | || || || |||| || | || | || ||||| || Sbjct 40154 AGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCGTTAGAG---GAAATCCACTTGAA 40210 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| |||| ||| |||| ||| || || || || || ||| || | ||| Sbjct 40211 GGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTC 40270 Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 ||||||| || | || || || ||||| | | || || |||| | ||| || Sbjct 40271 TTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAAT 40330 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG-ACCATTGTACCTCCG 14029 |||||| || || ||||| ||||| |||||| ||||||| | | ||| || || Sbjct 40331 GTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTCAT 40389 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 |||| ||| ||||||||||||||||||| ||||| | | ||||| || |||| Sbjct 40390 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCCA 40449 Query 14090 ATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAAT 14146 | | | |||||| | || | ||| | | |||| |||||| | || Sbjct 40450 AGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGAT 40509 Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 |||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 40510 CCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 40564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478580508449040