Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq107 154 2e-32 seq176 122 1e-22 seq17 118 2e-21 seq47 105 1e-17 >seq107 Length=77526 Score = 154 bits (170), Expect = 2e-32 Identities = 544/842 (65%), Gaps = 22/842 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| || | || || || ||| | || ||||||||||| | ||||| ||||| || Sbjct 40576 ATCTGGCAATTCTATAAGAAAGCTGAAGCTTCCTTTTGGACAGCTGAAGAAATCGATTTG 40517 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||| || | |||||||| | |||| |||| || || ||||| || Sbjct 40516 AGCAAGGATCTTCATGATTGGGAAAACAAGATGACCGAAAACGAACGCTTCTTTATCTCT 40457 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | | |||||||||||||| || || ||||| || || || || || || | | Sbjct 40456 CGCGTCTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAAC 40397 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | | | || | | ||||| || | || || || || || |||||||||||| Sbjct 40396 TTTTGTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATT 40337 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 || ||| | ||| | |||| ||| | ||||||||| || || ||| ||| Sbjct 40336 GAAAACATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAA 40277 Query 125319 CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAA 125378 ||| | ||||||||| || || ||||| | || | ||| | ||||||| | Sbjct 40276 GAGAAAGAAATGCTCTTTTCTGCTATTGACACTATCCCTTGTATCAAAAGAAAGGCTGAT 40217 Query 125379 TGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTC 125438 |||| | |||||| | | || ||| | || || | || || || || Sbjct 40216 TGGGCCTTCAAGTGGAT---TTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTT 40160 Query 125439 GCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAG 125498 || || || || || |||||||| || ||| ||||| |||| |||||||||||||| Sbjct 40159 GCTGCTGTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATTTTTTGGCTCAAGAAA 40100 Query 125499 CGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTA 125558 || || | ||||| || |||| ||| || || || || | ||| || || ||||| Sbjct 40099 CGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTT 40040 Query 125559 CACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC-AG 125617 || ||||||||| ||| | ||| | | |||| ||| || | ||| || Sbjct 40039 CATACTGACTTTGCTTGTCTTTTATTT---ACCCATCTTCGT---AAGCG----TCCTAG 39990 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | | ||| |||| | || | || || || || || ||||| || ||| | || Sbjct 39989 CCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAGGAATTTTTGAC 39930 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAA--CTGCAAGCTAATGTGCGAGTACATA 125735 || | || || || | || |||||||| |||| | |||||| | ||||| Sbjct 39929 GGATGCTCTTCCCGTTGCTCTCATCGGCATGAATTCTGC--CTTGATGTGCCAATACATC 39872 Query 125736 GAGTTTGTGGCAGATCGTCTACTG--TACGAGTTGATTGGCCGCAAGATTTACAACGCCA 125793 || || || || ||||| || || | | | |||| | ||||||||||| || | Sbjct 39871 GAATTCGTTGCTGATCGCCTCATGGTTGCTCTTGGATT--CGACAAGATTTACATGGCTA 39814 Query 125794 AGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853 ||||| ||||| || ||| || || || || | || ||||||||||| || || | Sbjct 39813 CCAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAA 39754 Query 125854 AG 125855 || Sbjct 39753 AG 39752 >seq176 Length=52331 Score = 122 bits (134), Expect = 1e-22 Identities = 166/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || || || || || ||||| |||||||| || ||||| |||| ||| |||| || || Sbjct 28271 GAAGGTGACCTTGGACCAGTCTACGGATTTCAATGGAGACACTTTGGCGCCAAATACGTT 28212 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACAC 70182 ||||| || || || ||| | || || || ||||||||||| || |||| | ||||| || Sbjct 28211 GACTGTGATACTGATTATACAGGACAAGGCGTTGATCAATTACA-ACAAGTGATTGATAC 28153 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 | | || | |||||| || ||| | || ||| | ||| ||||||| ||||||||| | Sbjct 28152 TATAAAAAACAATCCCACTGATCGTAGAATCATTCTGTCAGCATGGAACCCTGCAGATAT 28093 Query 70243 GCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGTTTTA 70287 | ||||| | ||||| ||||| || |||| ||||||||| Sbjct 28092 TCCTATCATGGCTTTGCCACCTTGTCATGCTTTTTG--TCAGTTTTA 28048 >seq17 Length=565816 Score = 118 bits (130), Expect = 2e-21 Identities = 348/531 (66%), Gaps = 8/531 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCAC 96864 || ||||| || ||| || || |||| |||||| | | | ||| |||| | | | Sbjct 455915 ACCAACGGTTACTCCAACGGATTACTGCCCATGCTCCGTGTTTTCAA--CAATACGGCTC 455858 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || || ||||| |||||||| || ||||| | || | ||||||||||| | Sbjct 455857 GTTATGTCGATCAAGGCGGTAATAAACGTCCGGGCGCATTCGCAATGTACTTGGAACCCT 455798 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| || ||| |||| |||| | || |||| ||||||| |||| || || Sbjct 455797 GGCATGCAGACATTTTCACCTTTTTAGATTTGCGAAAAAACTTTGGCAAAGACGAAATCA 455738 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 |||| | || |||| ||||| |||||| | || ||| | |||||| |||| |||| | Sbjct 455737 GAGCTCGCGATCTGTTCTATGCTCTCTGGATTCCTGATCTCTTCATGCAGCGTGTCAGAG 455678 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 ||||||| | ||| || | || ||| | | | || || | || |||| Sbjct 455677 ACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAGGCTCCTGGATTACATGAAATTTGGG 455618 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA--TACGTGAGACG 97162 | || ||||||| || || ||||| | || || || || | || || Sbjct 455617 GTGATGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTA-GAGAAAC- 455560 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 | || | || | | | |||||| | ||||| || |||||| ||||| || | ||| Sbjct 455559 AATCAAGGCTCAAAAGCTGTGGTATGCCATTTTGGAGGCTCAAACGGAGACAGGTAATCC 455500 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 || ||| ||||| |||||| | || | || || || || | ||||||| || || Sbjct 455499 GTTCATACTCTATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAACTTGGGTACGAT 455440 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333 ||| || ||| ||||| || |||||||| || ||| | ||| ||||| Sbjct 455439 CAAATGCAGCAACCTGTGTACAGAAATTGTTGAATACTCGAGTCCTGACGA 455389 >seq47 Length=189370 Score = 105 bits (116), Expect = 1e-17 Identities = 337/517 (65%), Gaps = 8/517 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCAC 96864 || ||||| || ||| || ||| |||| |||||| | | | ||| |||| | | | Sbjct 153168 ACCAACGGTTACTCCAACGGACTATTGCCCATGCTCCGTGTTTTCAA--CAATACGGCTC 153111 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || || ||||| ||||| || || ||||| | || | ||||||||||| | Sbjct 153110 GTTATGTCGATCAAGGCGGTAATAAGCGTCCGGGCGCATTCGCAATGTACTTGGAACCCT 153051 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| || || |||| |||| | || | || ||||||| |||| || || Sbjct 153050 GGCATGCAGATATTTTCACCTTTTTAGACTTACGAAAAAACTTTGGCAAAGACGAAATCA 152991 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 |||| | || |||| ||||| |||||| | || ||| | |||||| |||| |||| | Sbjct 152990 GAGCTCGTGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGCGTGTCAGAG 152931 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 ||||||| | ||| || | || ||| | | || || | || ||||| Sbjct 152930 ACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAAGCTCCTGGATTACATGAAATCTGGG 152871 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA--TACGTGAGACG 97162 | || ||||||| || || ||||| | || || || || | || || Sbjct 152870 GTGACGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTA-GAGAAAC- 152813 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 | || | || | | | || ||| | ||||| || ||||| ||||| || | ||| Sbjct 152812 AATCAAGGCTCAAAAGCTATGGTATGCCATTTTGGAAGCTCAAACGGAGACAGGTAATCC 152753 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 || ||| ||||| |||||| | || | || || || || | ||||||| || || Sbjct 152752 GTTCATACTCTATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAACTTGGGTACGAT 152693 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||| || ||||||||| || |||||||| || ||| Sbjct 152692 CAAGTGCAGCAATCTGTGTACAGAAATTGTTGAATAC 152656 Score = 104 bits (114), Expect = 3e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGA-CGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || ||||||||| | || |||| | | || || ||||| || || ||||| Sbjct 108526 TACAAGACCGTGTGGGAGATTTC-ACAAAGAACTATTATTGACATGGCCGCTGATAGAGG 108584 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | || |||||||| |||||| | ||| ||| |||||| || | || | Sbjct 108585 AGCCTTTATTGACCAATCTCAATCTATGAATTTGTTTACTGCCGAACCAAACTTTGGCAA 108644 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 ||||||| || |||||||| || ||||| ||||| || ||||| |||||||||||| | Sbjct 108645 ATTGACTTCTATGCACTTTTATGCCTGGAAGAAGGGACTAAAGACTGGCATGTACTATTT 108704 Query 98219 GAGA 98222 |||| Sbjct 108705 GAGA 108708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046361149360