Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq107 178 3e-39 seq1 163 7e-35 seq4 158 3e-33 seq27 98.7 2e-15 >seq107 Length=77526 Score = 178 bits (196), Expect = 3e-39 Identities = 310/445 (70%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| | || ||||| | | ||||| || ||||| ||||| | || | || || | Sbjct 40452 TCTTGGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTT 40393 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 || | || || ||||||||||||| | |||||| || || || || || || |||| Sbjct 40392 GTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAA 40333 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGA-A 269032 | ||||| |||| | |||||||| || || || |||||||| | |||||| | || | Sbjct 40332 ACATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAAGAGA 40273 Query 269033 AAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 |||||| | || |||||| |||| ||||| ||| | | || ||| |||| ||| Sbjct 40272 AAGAAATG-CTCTTTTCTGCTATTGACACTATCCCTTGTATCAAAAGAAAGGCTGATTGG 40214 Query 269093 GCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 || | || ||||| | || || ||| | || | | ||||| ||||| ||| Sbjct 40213 GCCTTCAAGTGGATTTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTTGCTGCT 40154 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || |||||||| ||||| || || || ||||| | || |||||| | |||||| | || Sbjct 40153 GTCGAAGGTATCTTCTTCTCTGGTTCCTTTGCTTCCATTTTTTGGCTCAAGAAACGTGGT 40094 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG--TTTACACT 269270 | ||||| || || || ||| || |||||||| | | || ||||| || | ||| Sbjct 40093 TTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTTCATACT 40034 Query 269271 GCGACTTCGCTTGTTTATTATTTAC 269295 ||||| |||||| | |||||||| Sbjct 40033 --GACTTTGCTTGTCTTTTATTTAC 40011 >seq1 Length=2399970 Score = 163 bits (180), Expect = 7e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || |||||||| ||||| | || || || |||||||| ||| Sbjct 341843 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTGTTTACCA 341784 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||| |||||||| || ||||| ||||| ||||||||| || Sbjct 341783 GCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTG 341724 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||| || ||| || |||| ||||| ||||| || ||||| || Sbjct 341723 ACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTC 341664 Query 104543 TTTACAAATATCTGCATTTT 104562 ||||| || || |||||||| Sbjct 341663 TTTACGAAGATTTGCATTTT 341644 Score = 156 bits (172), Expect = 1e-32 Identities = 176/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 104327 TTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTAT 104384 |||||| || || | || | ||| || || || | ||||||||||| ||||| |||| Sbjct 342579 TTTATTGACCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTAT 342520 Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 | ||| | ||| | ||||||||| |||||||| ||||| ||||| || | ||||| | Sbjct 342519 AATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGT 342460 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 ||||||| || ||||| ||||| ||||||||| || |||||||| | ||||| || Sbjct 342459 CAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAG 342400 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || |||||||||||||| || || ||||| || ||||| Sbjct 342399 ACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || ||||| ||||| | || ||||| |||||||| ||| Sbjct 342313 GTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCCATCTTCAAGTTGTTTACCA 342254 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || || |||||||| || ||||| || || || |||||| || Sbjct 342253 GCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGGATCTTTTGCTTG 342194 Query 104483 ACATTTTC 104490 |||||||| Sbjct 342193 ACATTTTC 342186 Score = 93.3 bits (102), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| |||||||| ||||| ||||| || | || || |||||||| || ||||| Sbjct 342032 CCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCC 341973 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || |||||| || |||||||| | | || | || |||| ||| Sbjct 341972 TTGTCTTGGATCTTTTGCTTGACATTTTCGATACTNTCAGAATTACGAACTTCTAAGGTA 341913 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||||||||| || || ||||| || ||||| Sbjct 341912 ATAGTTTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 341875 >seq4 Length=1094480 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || |||||||| |||||| | || ||||| |||||||| ||| Sbjct 349629 GTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCGAGTTGTTTACCA 349570 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||||||||| || ||||| || || ||||||||| |||| Sbjct 349569 GCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTT 349510 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || ||| || |||| ||||| ||||| ||||||||||| Sbjct 349509 ACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTC 349450 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 349449 TTGACAAAGATTTGCAT 349433 >seq27 Length=327670 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || || ||| | || | ||||||||| |||||||| || Sbjct 85894 GTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 85835 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||||| || ||||| ||||| || |||||| || Sbjct 85834 GCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTG 85775 Query 104483 ACATTTTCTACGGTATC 104499 ||||| || | ||| || Sbjct 85774 ACATTGTCAATGGTGTC 85758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151377953323288