Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq13 116 4e-21 seq176 105 8e-18 >seq13 Length=664605 Score = 116 bits (128), Expect = 4e-21 Identities = 363/553 (66%), Gaps = 33/553 (6%) Strand=Plus/Minus Query 6721 AATTCAAAATCTTCAAATTTAAAATCACATAAATTATCAGACtttttttttAATATTACA 6780 ||| ||||||||||||| || |||||| | | |||| ||||| || || || | Sbjct 416978 AATACAAAATCTTCAAACTTGAAATCATCGATAGTATCT-ACTTTACGGTTGATTTTTAA 416920 Query 6781 AC-AGGTGAAGGTTTTATTGATCGAGTTAAT--TGTTCTTTTATAGCTTTTATATGATCT 6837 | ||| ||||||| | || ||| | |||| || | || | | |||||| Sbjct 416919 AGTAGGGAAAGGTTTGGGT--TCACGTTGAACCTGTTGCTTGAGTGCGTCAAGATGATCC 416862 Query 6838 AAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCT 6897 | ||||| ||| | ||| || | ||||| || |||||||| || | | ||| | Sbjct 416861 ACATAAACATGTGTATCGCCCATTGTATGTATGAATTCACCAGGATCAAGATCTGTTACA 416802 Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || ||||| | ||| || | |||||||||||| | ||| ||||| ||||| | ||| Sbjct 416801 TGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAATATTGAAAGGAACACCCAGCCCC 416742 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT------------ATT-----GT 7000 ||||| || | |||||| ||||||||| | || || Sbjct 416741 ATATCACAAGAACGTTGATAGAGCACACAAGATAACTTGGCACGTCCGCCATCCTGCGGT 416682 Query 7001 CTAT-AG---CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT--A 7054 || || ||||||||||||| || ||||||| || |||||| | | |||| | Sbjct 416681 GGATTAGATACATAAAATTGACAAAAGGCATGACAAGGTGGTAAAGC--CATGATAGGAA 416624 Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 |||| | || ||||| || | | | || | | |||| | ||||| |||||| || Sbjct 416623 TATCTGCAGGGTTCCATGCTGATAGAATGATTCTGCGATCAGTGGGATT-GTTTTTTATA 416565 Query 7115 TTGTTA-TAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 ||| | | | | |||||||||||| || || || ||| ||||| || || ||||| Sbjct 416564 GTGTCAATCACTTGTTGTAATTGATCAATGCCTTGTCCTGTATAATCAGCATCACAATCA 416505 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 | || || || ||||| |||||||||||||| || || | || || | ||| ||||| Sbjct 416504 ACGTATTTGGCACCAAAGTGTCTCCATTGAAATCCGTAGACTGGTCCAAGATCGCCTTCA 416445 Query 7234 TCACGATGATTAA 7246 ||| ||| ||| Sbjct 416444 CGACGGTGAGTAA 416432 >seq176 Length=52331 Score = 105 bits (116), Expect = 8e-18 Identities = 289/440 (66%), Gaps = 27/440 (6%) Strand=Plus/Plus Query 6831 ATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATC 6890 |||||| | ||||| ||| | ||| || | ||||| || |||||||| |||| | ||| Sbjct 27849 ATGATCCACATAAACATGTGTATCGCCCATTGTATGTATGAATTCACCAGGTTCAAGATC 27908 Query 6891 AACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACC 6950 | || ||||| | ||| || | |||||||||||| | ||| ||||| || || Sbjct 27909 TGTTACATGCGCAATCATGCGTGTCAAAAGTGCATAAGAAGCAATATTGAAAGGAACCCC 27968 Query 6951 TAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA------------AATATT 6998 | ||||||||| || | |||||| |||||||| | ||| Sbjct 27969 CAGTCCCATATCGCAAGAACGTTGATAGAGCACACAAGATAGCTTGGCACGTCCACTATC 28028 Query 6999 GTCTA------TAG---CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTG 7049 | | ||| ||||||| ||||| || ||||||| || || ||| | | || Sbjct 28029 CTGTGGTGGATTAGATACATAAAACTGACAAAAAGCATGACAAGGTGGCAAAGC--CATG 28086 Query 7050 ATCT--ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTT 7107 || ||||| | || ||||| || | || | || | | |||| | ||||| ||| Sbjct 28087 ATAGGAATATCTGCAGGGTTCCATGCTGACAGAATGATTCTACGATCAGTGGGATT-GTT 28145 Query 7108 TTTAATTTTGTTA-TAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATG 7166 ||| || | | | | | | |||||||||||| | || || ||| ||||| ||||| Sbjct 28146 TTTTATAGTATCAATCACTTGTTGTAATTGATCAACGCCTTGTCCTGTATAATCAGTATC 28205 Query 7167 ACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATC 7226 ||| | | || || || ||||| |||||||||||||| || || | || || | || Sbjct 28206 ACAGTCAACGTATTTGGCGCCAAAGTGTCTCCATTGAAATCCGTAGACTGGTCCAAGGTC 28265 Query 7227 ACCTTCTTCACGATGATTAA 7246 |||||| ||| ||| ||| Sbjct 28266 ACCTTCACGACGGTGAGTAA 28285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595861676517600