Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4 136 4e-27 seq9 93.3 4e-14 seq1 93.3 4e-14 >seq4 Length=1094480 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||||||| | |||||| ||||| | ||| | ||| || Sbjct 349641 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCG 349582 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| | | ||| ||||| |||||||||||||| ||||| | | Sbjct 349581 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 349522 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| || || | ||| |||||||| || || || | || || || ||| Sbjct 349521 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTT 349462 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||||| || || |||||||| |||||| Sbjct 349461 CCAGTAAGTGTCTTGACAAAGATTTGCATG 349432 >seq9 Length=817392 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 || ||||| | ||||||||||||||| | ||| || ||||||| || || || || | Sbjct 168577 ACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCA-AG-GTACGACCGTCTT 168634 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || ||||| ||| ||||||| | | ||| || || |||||||||||||| ||||| | Sbjct 168635 CGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTT 168694 Query 94917 AAATTTTTGCCTTGACG 94933 ||| ||| ||||||| Sbjct 168695 GAATCTTTTGCTTGACG 168711 >seq1 Length=2399970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||||||||| ||||| | ||||||||| |||| ||| || || Sbjct 342553 ACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCG 342494 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || | || || | | ||| || || ||||| |||||||| || || | | Sbjct 342493 AGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 342434 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| |||||| | | | | || | || || || | |||||||| || Sbjct 342433 ATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTA 342374 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| || |||||||| ||||| Sbjct 342373 CCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283433354960