Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25 206 4e-49 seq983 196 8e-46 seq26 196 8e-46 seq6 188 1e-43 >seq25 Length=399763 Score = 206 bits (228), Expect = 4e-49 Identities = 208/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | ||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 291522 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 291464 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 291463 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 291404 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || ||||||| |||||| | | |||||| | ||||||| | ||||| || Sbjct 291403 TCGTAACGTCTTGAAGACTTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTATACTGA 291344 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 291343 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 291284 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| || ||||| Sbjct 291283 CCGTACCCTCTATGGTTTCGGTGGTTAA 291256 >seq983 Length=3387 Score = 196 bits (216), Expect = 8e-46 Identities = 215/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 595 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGCATTACCAAGCCTGCTAT 653 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 654 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 713 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || ||||| ||||||| | | |||||| | ||||||| | || || || Sbjct 714 TCGTAACGTCTTGAAATCCTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTACACTGA 773 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 774 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 833 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC-TTCTAATCAAA 16712 ||||| | |||||||| || | ||| | |||| ||| || Sbjct 834 CCGTACCCTCTATGGTTTCGGTGGATAAGCATTCTCATCTAA 875 >seq26 Length=359709 Score = 196 bits (216), Expect = 8e-46 Identities = 215/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 60829 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 60887 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | | |||||||| | Sbjct 60888 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATTTATGAAGAAAC 60947 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || |||||| ||||||| | | |||||| | ||||||| | || || || Sbjct 60948 TCGTAACGTCTTGAAGTCCTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTACACTGA 61007 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| || || ||||| | |||||||| | || | ||||| Sbjct 61008 ACATGCCAAGAGAAAGACTGTTACTTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 61067 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC-TTCTAATCAAA 16712 ||||| | |||||||| || ||||| | |||| ||| || Sbjct 61068 CCGTACCCTCTATGGTTTCGGTGGTTAAGCATTCTCATCTAA 61109 >seq6 Length=1036844 Score = 188 bits (208), Expect = 1e-43 Identities = 200/261 (77%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||| | ||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 1020209 GCTAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 1020151 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 1020150 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 1020091 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||||| ||||| | | ||||| | ||||||| | ||||| || Sbjct 1020090 CCGTAACGTCTTGAAGACTTTCCTTGAAAATGTTATTCGTGATGCTGTTACTTATACTGA 1020031 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| || ||| ||||| |||||||||| | || | ||||| Sbjct 1020030 ACATGCCAAGAGAAAGACTGTTACTTCCTTGGATGTCGTCTATGCTCTCAAGAGACAAGG 1019971 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 1019970 TCGTACTCTCTACGGTTTCGG 1019950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073932770498