Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4 145 7e-30 seq1 131 2e-25 seq9 116 4e-21 seq107 113 4e-20 seq27 113 4e-20 >seq4 Length=1094480 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26753 TTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCAT 26812 |||||| | ||| |||||| | ||||| || ||| | |||||||| | || || | Sbjct 349417 TTTTTATAAATACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTT 349476 Query 26813 CGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 26872 ||| | ||||| ||||| ||||| | || |||||||||||| ||||| ||||| Sbjct 349477 AGAAGTTGAATCTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGG 349536 Query 26873 GATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 26932 || ||||| ||||||||| | ||||| | | || |||||||||||||||| | | Sbjct 349537 TATTCCTCCTGATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTAC 349596 Query 26933 CGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | |||||||||||||| ||||| ||||||||| | || ||||||| Sbjct 349597 TCTAAGCGACTATAACATCCAAAAGGAATCTACTCTTCACTTGGTCCT 349644 >seq1 Length=2399970 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | ||||| || | |||||| | ||| | || || | Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | || || | ||||| ||||||||| || || ||||| || ||||| || ||| Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || || |||||||||||||| | | | | | || || |||||| Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||||||||||| | || ||||| || Sbjct 342525 ATTCAAAAAGAATCTACTCTTCACCTGGTTCT 342556 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | || ||||| || | || || || | || || | ||| | ||||| Sbjct 341644 AAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATCT 341703 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || | ||||| | ||||| ||||||||| || || ||||| || ||||| || Sbjct 341704 TCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGAC 341763 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| ||||| || | | || ||||||||||| |||| | | || ||||| Sbjct 341764 CAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTAC 341823 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||||||||||||| | || ||||||| Sbjct 341824 AACATCCAAAAAGAATCTACTCTTCACTTGGTCCT 341858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26835 ATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGA 26894 ||||| | ||||| |||||||| ||||| ||||| || ||||| || || ||| | Sbjct 342183 ATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGT 342242 Query 26895 CTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAA 26954 || |||| || || |||||||| ||||||| | | | ||||| ||||| ||| Sbjct 342243 CTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTCTNNNNGACTACAACATCCAA 342302 Query 26955 AAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||||| | || ||||||| Sbjct 342303 AAAGAATCTACTCTTCACTTGGTCCT 342328 >seq9 Length=817392 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||| || | ||||| ||||||||| ||||| ||||| || ||||| || || Sbjct 168726 CGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCA 168667 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | || || | | ||| |||||||||||||| | | | | | | |||||||| || Sbjct 168666 ACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACAA 168607 Query 26948 CATTCAAAAAGAATCTACTATCCA 26971 ||| ||||| ||||||||| |||| Sbjct 168606 CATCCAAAAGGAATCTACTCTCCA 168583 >seq107 Length=77526 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 119655 ACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAA 119714 ||||| |||||||| || || |||||||| | |||||| || | | |||||| || || Sbjct 39747 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAAT 39806 Query 119715 GGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACA 119774 ||||| | || || || ||||||| | || | | | || || ||||| || || Sbjct 39807 GGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAACCATGAGGCGATCAGCAACG 39866 Query 119775 AACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCA 119834 || |||||||||| |||||| | ||||||||||| | | ||| || || | |||| Sbjct 39867 AATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCGATGAGAGCAACGGGAAGAGCA 39926 Query 119835 TTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 | || || || |||| ||||||| ||| ||||| Sbjct 39927 TCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTC 39961 >seq27 Length=327670 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||||| || || ||||| || ||||| |||||| Sbjct 85758 GACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAA 85817 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || ||| |||||||||||||| | | | | | | || || || ||| Sbjct 85818 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAAC 85877 Query 26949 ATTCAAAAAGAATCTAC 26965 |||||||| |||||||| Sbjct 85878 ATTCAAAAGGAATCTAC 85894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478654107173920