Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq1 109 5e-19 seq27 102 7e-17 seq9 95.1 1e-14 seq47 93.3 4e-14 >seq4 Length=1094480 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 23975 TTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 |||||| | ||| |||||| | ||||| || ||| | |||||||| | ||||| | Sbjct 349417 TTTTTATAAATACATCATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTT 349476 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 ||||| || | ||||| ||||| | || |||||||||||| ||||| ||||| Sbjct 349477 AGAAGTTGAATCTTCTGACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGG 349536 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAA 24154 || ||||| |||||||| | || || | | || || ||||||||||||| | | | Sbjct 349537 TATTCCTCCTGATCAACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTAC 349596 Query 24155 CGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | ||||| |||||||| ||||| |||||||| |||| || || Sbjct 349597 TCTAAGCGACTATAACATCCAAAAGGAATCTACTCTTCACTTGGT 349641 >seq1 Length=2399970 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | || ||| | ||||| ||| | | Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || | || || | ||||| ||||||||| || || ||||| || ||||| || ||| Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || || || ||||||||||| | | | | || ||||||||| Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||||||||||||||| |||| Sbjct 342525 ATTCAAAAAGAATCTACTCTTCA 342547 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || ||||| || | || || || | ||||| | |||||||| | Sbjct 341644 AAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATCT 341703 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || | ||||| | ||||| ||||||||| || || ||||| || ||||| || Sbjct 341704 TCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGAC 341763 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || || |||||||| |||| | | | || || || Sbjct 341764 CAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTAC 341823 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| |||||||||||||| |||| || || Sbjct 341824 AACATCCAAAAAGAATCTACTCTTCACTTGGT 341855 >seq27 Length=327670 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||||| || || ||||| || ||||| |||||| Sbjct 85758 GACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAA 85817 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||| || ||||||||||| | | | | | || ||||| ||| Sbjct 85818 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAAC 85877 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| |||||||| |||| || || Sbjct 85878 ATTCAAAAGGAATCTACCCTTCACTTGGT 85906 >seq9 Length=817392 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | ||||| ||||||||| ||||| ||||| || ||||| || || Sbjct 168726 CGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCA 168667 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | ||| || ||||||||||| | | | | | ||||| || || Sbjct 168666 ACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACAA 168607 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| |||||||| | || ||||| Sbjct 168606 CATCCAAAAGGAATCTACTCTCCACTTAGT 168577 >seq47 Length=189370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 312/467 (67%), Gaps = 24/467 (5%) Strand=Plus/Plus Query 133175 TTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCC 133234 |||||| ||||| ||||| || ||||| ||||||||||| || || | || | || Sbjct 153014 TTTCGT---AAGTCTAAAAAGGTGAAAATATCTGCATGCCAGGGTTCCAAGTACATTGCG 153070 Query 133235 AAAGCGCCTTTCC---TTTTACCTCCCTGATCCACATGTCTAAGCATGCTGTTGAAGACA 133291 || ||||| | | ||||| || ||||| |||| | | | | ||||||| ||| Sbjct 153071 AATGCGCCCGGACGCTTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACA 153130 Query 133292 CGCAATGCAGGACCCAATCCTGCG--GCAGTA-CCGTTGGTGGATTTG-ATTTTACTGTT 133347 || | ||| | | ||| | || | |||| |||||||| | | | | || || | Sbjct 153131 CGGA--GCATGGGC-AATAGTCCGTTGGAGTAACCGTTGGT--ACCGGCAATGTA-TGAT 153184 Query 133348 --AGCGGCACGAAT-TTGAGAAACGTTAAGGCCTATACCGCCTCCGTGT-TTAGATATCA 133403 | |||||||| ||| ||| ||| | ||| ||||| ||| | ||| || || || Sbjct 153185 CCACTAGCACGAATGTTGTGAAT-GTTCAAGCCAATACCACCTGC-TGTCTTGGAGATTT 153242 Query 133404 TGGCACAATCGTTGAGAGTTTTATAGATGCCATTGATGCTGTCTTCCTGGATGTTGAGCA 133463 ||||| ||||| || | |||||| || | ||| ||||||| ||| |||||| Sbjct 153243 GAGCACAGATTTTGAGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCA 153302 Query 133464 AATAACACGACGACATCTGAGGCATTTTCATGCCAGAAGAAAACAAAGTGGGACTAGCGT 133523 | | || || |||||||| || |||| | | ||| | ||| |||||||||| Sbjct 153303 AGAAGCAAGAAGACATCTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGT 153362 Query 133524 GAGTAAA-CAGCTTTGATCGCATCAATCTGTAGGACTCAATTGCGCTTTCAATGTCTTCA 133582 | ||||| | |||| | |||||| |||| | |||||| || ||||| || Sbjct 153363 GTGTAAAGTATCTTTCA-GACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTT 153421 Query 133583 CCATGAATTTGTAGCGCTACACGCATCAGCATATGTTGAGGTCGCTC 133629 ||||| || | ||| |||||||| | || ||||||||| || || Sbjct 153422 CCATGGATACCGATCGCAACACGCATAATCAAATGTTGAGGACGTTC 153468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429928737574830