Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 seq27 96.9 3e-15 seq17 86.0 6e-12 seq47 82.4 7e-11 >seq1 Length=2399970 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| |||| || || ||| || || || || || Sbjct 342541 GTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCA 342482 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||| || ||||| |||||||| ||||| || || || || |||||| Sbjct 342481 GCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTG 342422 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | | |||||| ||||| | || | ||| | ||| ||||| || ||||| Sbjct 342421 ACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAGTC 342362 Query 131218 TTTACGAAAATCTGCAT 131234 || || || || ||||| Sbjct 342361 TTGACAAAGATTTGCAT 342345 >seq27 Length=327670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| || |||||||||||||||||||| ||| Sbjct 85924 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 85865 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || || || || ||| | || | ||| || || || |||||| Sbjct 85864 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 85805 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| || || ||| || ||||||| Sbjct 85804 ATACCTTCCTTATCTTGGATCTTTTGCTTGA 85774 >seq17 Length=565816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 468/742 (63%), Gaps = 11/742 (1%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||| | || | || || | | ||||||||| ||| | ||| || ||| | | Sbjct 454793 GATTGACCATTTGGTATTCACCTGAGAGCACACGACGGGTATAAAAGTTGGATGTGTAAG 454852 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 |||||||| |||| || || || ||||||| || | || || ||||| || | Sbjct 454853 GTTCAAAACACTCATTGAAACCGAGCATTTGAGAAGTGGAAGCAGTAGGCATAGGAGCAA 454912 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 ||| | || || || | || ||||| || | |||||| || | |||| |||| Sbjct 454913 CCAGCAGAGAGTTACGGACACCATGCTTGGCAATCTTTTCCTTGAGTGCGGCCCAGTCCC 454972 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || || | || | |||||||||||| |||| || |||| | | || | Sbjct 454973 AGAGATTGGTAGGTGTGACATTCCACATGTCGTATTGCAGGATACCCTTGGATACAGGAC 455032 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 |||||| | ||| ||| || | ||| || | |||||| || |||| | Sbjct 455033 TGCCTTCATAGGTTTCGTAGGGTCCATACTTTTCAGCCAACTCGCAGGAGGCTTCCAAGG 455092 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | || || || || ||||| |||| ||| || | |||||| ||| Sbjct 455093 CAGCATGGTAGATGGTTTCAAAGATTTGAATGTTCAGCTGCTTGGCTTCAGGTGAATCGA 455152 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || ||| || | |||| ||||| | || || | || | || || || | Sbjct 455153 ATGGATAGCGAAGAGCCATGAAAGTGTCGGCTAAGCCTTGAACACCTAAACCAATCGGTC 455212 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGAT---AGGATATCGATTACGGTCGATAA 145532 |||| || ||||| ||| | | | ||||| ||| || ||| ||||| | Sbjct 455213 TATGTCTCTTGTTGG--ATCTTT-CGGCTTCGATGACAGGGTAGTAATTGATATCGATGA 455269 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592 | || |||||||||| | ||||| |||| | ||| |||| || ||| || Sbjct 455270 TCTTGTTCAAGTTTCTAGTGATAACCTTGGTAACATCGTGCAGTTTTTGGAAATCATACT 455329 Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 | | || |||| || || | || || || ||||| ||||| || || Sbjct 455330 TTTCTCTATTAAT---CACATAGGTAGGCAGAGCAATGGAGGCCAAGTTACAGACAGCGA 455386 Query 145653 TCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTT 145711 || || || ||| ||||| || || || | |||| ||||| |||||||| || Sbjct 455387 CTTCGTCAGGACTCGA-GTATTCAACAATTTCTGTACACAGGTTGCTGCATTTGATCGTA 455445 Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771 |||| |||||||||||||| || ||||| || || ||||| ||||| ||| |||| Sbjct 455446 CCCAAGTTTTGCTGATTACTCTTTCTGTTACAAGCATCCTTATAGAGTATGAACGGATTA 455505 Query 145772 CCAGTCTCCACCTGCGTCTCCA 145793 || |||||| || | ||||| Sbjct 455506 CCTGTCTCCGTTTGAGCCTCCA 455527 >seq47 Length=189370 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTC 145683 || || || ||||| ||||| || || || || || ||| ||||| || || || Sbjct 152612 GCAATGGAGGCCAAGTTACAGACAGCGACTTCATCAGGACTCGA-GTATTCAACAATTTC 152670 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | |||| |||||| || ||||| || |||| |||||||||||||| || ||||| || Sbjct 152671 TGTACACAGATTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTCTTTCTGTTACA 152730 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCC 145780 || ||||| ||||| ||| |||| || |||||| Sbjct 152731 AGCATCCTTATAGAGTATGAACGGATTACCTGTCTCC 152767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004622378240