Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq27 95.1 8e-15 >seq4 Length=1094480 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| |||||||| |||||||| || || || || Sbjct 349661 TACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGC 349602 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | |||||| || ||||| || || ||||||||||| | | Sbjct 349601 TTAGAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAG 349542 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| ||||| || ||||| | || ||| || | ||||| Sbjct 349541 GAATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAA 349482 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||| ||||| || || || || | || || || || || |||||| Sbjct 349481 CTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATG 349432 >seq27 Length=327670 Score = 95.1 bits (104), Expect = 8e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| || ||||||||||| ||||||||| Sbjct 85926 TACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAC 85867 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || | |||||| ||||| || || || ||||||||||| | | Sbjct 85866 TCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAG 85807 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 ||| ||||| || || || |||||||| ||||| Sbjct 85806 GGATACCTTCCTTATCTTGGATCTTTTGCTTGACATT 85770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941542113766