Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq4 120 3e-22 seq9 107 2e-18 >seq1 Length=2399970 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || ||||| ||||||| | ||||| ||||| || Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||| || | |||||||| || || || ||||| || || ||||||||| Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || |||||| | ||||| | ||| ||| || | ||||| || Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 |||||||||||||| || || || Sbjct 342525 ATTCAAAAAGAATCTACTCTTCA 342547 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || ||||||||| | ||||| || | || || | ||||| || || Sbjct 341643 AAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATC 341702 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| | |||||| | |||||||| || || || ||||| || || ||||| Sbjct 341703 TTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGA 341762 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | |||| ||||| || |||||| | || |||| || ||| | || || Sbjct 341763 CCAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTA 341822 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||||||||| || || || || || || Sbjct 341823 CAACATCCAAAAAGAATCTACTCTTCACTTGGTCCT 341858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||||||| ||| ||||| ||||| ||||| |||||||| || || ||||||| || Sbjct 342195 AAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTCTTATTTTCGCT 342254 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||| | ||||||| || ||| | || ||||| || ||||||||||| || Sbjct 342255 GGTAAACAACTTGAAGATGGCCGTACTCTNNNNGACTACAACATCCAAAAAGAATCTACT 342314 Query 25197 CTACATTTAGTGCT 25210 || || || || || Sbjct 342315 CTTCACTTGGTCCT 342328 >seq4 Length=1094480 Score = 120 bits (132), Expect = 3e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | || || | ||||| || || ||| Sbjct 349433 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCT 349492 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || || ||||| || ||||| ||||| ||||| ||||| | Sbjct 349493 GACACTATCGA--CAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATC 349550 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || |||||| | ||||||| || ||| | |||| || | Sbjct 349551 AACAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCGACTATA 349610 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||| || || || || || || Sbjct 349611 ACATCCAAAAGGAATCTACTCTTCACTTGGTCCT 349644 >seq9 Length=817392 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||||||| || ||||| ||||| ||||| ||||||||||| || |||| |||||| Sbjct 168707 AAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCC 168648 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||| | ||||| | ||| || || |||| ||||| || ||||| ||||| || Sbjct 168647 GGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAATCTACT 168588 Query 25197 CTACATTTAGTGCT 25210 || || ||||| || Sbjct 168587 CTCCACTTAGTTCT 168574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320680277590