Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq107 208 8e-49 >seq107 Length=77526 Score = 208 bits (230), Expect = 8e-49 Identities = 596/908 (66%), Gaps = 30/908 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||||| ||||| || ||| || | ||| ||||| |||||| Sbjct 39671 TTAGAAATCAGCATCTAAGGTAAAGGTCTTTTCAGCAGGCTGCTTGTTCATGACACCAGC 39730 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || ||||||||||| || ||||| |||| | ||| ||| Sbjct 39731 ACGTTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCAT 39790 Query 92862 ATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCA---CC--GATCAACTCG 92914 | || | || | |||||| | || | ||| ||| || || || |||| Sbjct 39791 GTCCATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCGAATCCAAGAGCAAC--- 39847 Query 92915 TACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCT 92974 || | | |||||| || ||||| ||||| || ||||||| || ||||||| || Sbjct 39848 --CATGAGGCGATCAGCAACGAATTCGATGTATTGGCACATCAAGGCAGAATTCATGCCG 39905 Query 92975 AGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTC 93034 | ||| || || ||||| || ||||| || || | || || || ||||| Sbjct 39906 ATGAGAGCAACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAG 39965 Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 | ||| || | || | | || | | | ||||| | | ||| || || || Sbjct 39966 ATGATATCCTTGACGCGT-TCTTGGCTAGGACGCTTACGA-AGATGGGTAAATAAAAGAC 40023 Query 93095 --GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 |||||||| ||||| | ||||| || || | ||||| |||||||||||||| |||| Sbjct 40024 AAGCAAAGTCAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAAC 40083 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 | || | || || ||||||||||||||||| || |||||||| |||||| || || | Sbjct 40084 CAGGCATCAAACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAGA 40143 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| || || ||||| || |||| ||| || |||||| || ||| | | Sbjct 40144 TACCTTCGACAGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCG---TTAGAGGAAA 40200 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 |||| || || |||||||| || ||| | || |||||||| | || || ||||| || Sbjct 40201 TCCACTTGAAGGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAA 40260 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 | || ||| ||| | |||| || || || || || || ||| || ||| Sbjct 40261 AGAGCATTTCTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTT 40320 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 | | || | || || || ||||| || || ||||||||| ||||||| | |||| Sbjct 40321 CTGCGTGAATGTTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCT 40380 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 ||||| | | |||| | | || | |||||||| || || ||||| || | |||| Sbjct 40381 TGACTTCATCACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAA 40440 Query 93513 aaaaaGCCAATATATGCTTTATAAA-------ATGTTTCTCATCATCTTTAAGCTTATCC 93565 | || ||||| | | ||||| |||| ||||||| || ||| Sbjct 40441 AGAAGGCCAAGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTT----GTTTTCC 40496 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 ||||| ||||| || | ||||| |||||| | |||||||| || ||||| ||| Sbjct 40497 CAATCATGAAGATCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCT 40556 Query 93626 TTTTTGTA 93633 || || || Sbjct 40557 TTCTTATA 40564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851152386640