Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq4 125 6e-24 seq9 118 9e-22 seq27 105 6e-18 seq236 84.2 2e-11 >seq1 Length=2399970 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| || || || ||| | ||||| || || | ||| | ||||| ||| | Sbjct 341643 AAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCGAATC 341702 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||| | || || |||| ||||| |||||||| ||||| ||||| || || || Sbjct 341703 TTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGA 341762 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||| | ||||| ||||| || ||||| | |||||| ||| || |||| || || Sbjct 341763 CCAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTGACTA 341822 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||||||||| || Sbjct 341823 CAACATCCAAAAAGAATCTAC 341843 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || ||||| || |||| | ||||| || | || Sbjct 342345 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAAGTTGAGTCTTCC 342404 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | || || |||| ||||| |||||||| ||||| ||||| || || || ||| Sbjct 342405 GATAGTATTGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 342464 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| | || || || || | ||||| ||| Sbjct 342465 CAACGTCTCATTTTCGCTGGTAAACAACTCGAAGACGGTCGTACTTTGAGTGATTATAAC 342524 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 342525 ATTCAAAAAGAATCTAC 342541 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351 || |||| ||||| || ||||||||||| |||||||| || || || ||||||||||| | Sbjct 342190 ATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTCTTATTT 342249 Query 22352 TTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAAT 22411 | || || ||||| | || ||| ||| || | || |||||||| |||||||||| Sbjct 342250 TCGCTGGTAAACAACTTGAAGATGGCCGTACTCTNNNNGACTACAACATCCAAAAAGAAT 342309 Query 22412 CCAC 22415 | || Sbjct 342310 CTAC 342313 Score = 86.0 bits (94), Expect = 5e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || |||||||| | || | ||||| | | Sbjct 341875 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAAACTATTACCTTAGAAGTTCGTAATTCT 341934 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||| ||||| || ||||||||||| |||||||| || || || Sbjct 341935 GANAGTATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAG 341994 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 ||||||||||| || || || ||||| | || ||| ||| || Sbjct 341995 CAACGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTAC 342038 >seq4 Length=1094480 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | ||| | ||||| ||| | | Sbjct 349433 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCT 349492 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | |||||||| |||||||||||||| |||||||| || |||||| Sbjct 349493 GACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 349552 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || ||||| | || ||| ||| || | ||| || ||| Sbjct 349553 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCGACTATAAC 349612 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 349613 ATCCAAAAGGAATCTAC 349629 >seq9 Length=817392 Score = 118 bits (130), Expect = 9e-22 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | ||| | |||| ||||| |||||||||||||| |||||||| || || | Sbjct 168727 CCGACACCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACC 168668 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||||||||||||| |||||||| ||||| | || || || ||| | ||| |||| Sbjct 168667 AACAACGTCTTATCTTTGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGCGACTACA 168608 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| ||||| ||||| || | || |||||| | || | || || ||| Sbjct 168607 ACATCCAAAAGGAATCTACTCTCCACTTAGTTCTCCGTCTTCGTGGTGGT 168558 >seq27 Length=327670 Score = 105 bits (116), Expect = 6e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||||| || ||||| ||||| ||||| || || |||||| Sbjct 85758 GACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAA 85817 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| ||||| | || || || ||| | ||||||||| Sbjct 85818 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAAC 85877 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 |||||||| ||||| ||| | || || ||| | || | || || ||| || Sbjct 85878 ATTCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGTATT 85928 >seq236 Length=40127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||||| || ||||| ||||| |||||||| || |||||| Sbjct 35436 GACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 35495 Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364 |||||||| || || |||||||| || Sbjct 35496 CAACGTCTCATTTTCGCCGGCAAGCA 35521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720910007090