Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 163 2e-35 seq4 150 2e-31 seq9 143 2e-29 seq27 129 5e-25 >seq1 Length=2399970 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | ||| | || | |||||||||||||||||||| ||||| || Sbjct 342572 ACCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACT 342513 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||||| ||||| ||||||||||||||| | |||||||| |||||||| ||||| Sbjct 342512 CAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGG 342453 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| || || ||||||||| || | | ||||| | |||| || || || Sbjct 342452 GATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAAC 342393 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || || || || ||||| || ||||| || ||||| Sbjct 342392 TTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | |||||||||||||| |||||||| || Sbjct 341876 ATACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCA 341817 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || |||||||||||||| |||| || | ||||||||| ||| Sbjct 341816 GAGAGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGA 341757 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||||||| || | | ||| | | || | |||||| Sbjct 341756 GGGATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCG 341697 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| ||||| ||||| || || ||||| Sbjct 341696 ACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 341647 Score = 120 bits (132), Expect = 3e-22 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | |||||||||||||| |||||||| || Sbjct 342346 ATACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCN 342287 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||||||||||||||||| | || ||||| || ||||| ||| Sbjct 342286 NNNAGAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGA 342227 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||||| ||||| ||||| |||||||| || Sbjct 342226 GGAATACCTTCCTTGTCTTGGATCTTTTGCTT 342195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/171 (74%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 ||| |||||| |||||||||||||||||||||| | || ||||| || ||||| |||| Sbjct 342043 TCAAAGTACGGCCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAG 341984 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT-CG 114332 |||| ||||| ||||| |||||||| || | | ||| | | || | ||| || Sbjct 341983 GAATACCTTCCTTGTCTTGGATCTTTTGCTTGACATTTTCGATACTNTC--AGAATTACG 341926 Query 114333 -ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || ||||| || ||||| || ||||| Sbjct 341925 AACTTCTAAGGTAATAGTTTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 341875 >seq4 Length=1094480 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | |||||||| ||||| ||||| || ||| Sbjct 349662 ATACCACCACGGAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCG 349603 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | |||||| |||||| |||||||||||||| |||||||||| ||||| || ||| Sbjct 349602 CTTAGAGTACGGCCATCTTCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGA 349543 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||||||||||| | || | ||||| | ||||| Sbjct 349542 GGAATACCTTCCTTGTCTTGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCA 349483 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || || || || || || || ||||| || |||||| Sbjct 349482 ACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTTGACAAAGATTTGCATG 349432 >seq9 Length=817392 Score = 143 bits (158), Expect = 2e-29 Identities = 135/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||||| || | |||||||| ||||| |||||||| ||| Sbjct 168556 ATACCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCG 168615 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| ||||| ||||||||||| || |||| ||||| |||||||| ||| Sbjct 168616 CTCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGA 168675 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 ||||| ||||| ||||| ||||||||| || | | |||| |||||||| Sbjct 168676 GGAATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGG 168727 >seq27 Length=327670 Score = 129 bits (142), Expect = 5e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||| ||||| || | | ||| || || | |||||||| ||||||||||||||||| Sbjct 85928 AATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATC 85869 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 |||| |||||| ||||| ||||||||||| ||| | |||||||| ||||| || || Sbjct 85868 ACTCAAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGG 85809 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322 ||| || ||||| || || |||||||| || | | |||| |||||| Sbjct 85808 AGGGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTC 85758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127303142232