Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 >seq13 Length=664605 Score = 107 bits (118), Expect = 2e-18 Identities = 375/581 (65%), Gaps = 37/581 (6%) Strand=Plus/Minus Query 20203 ATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATA 20262 ||| |||| || || || || || || || |||| | || ||||| |||| ||| Sbjct 416847 ATCGCCCATTGTATGTATGAATTCACCAGGATCAAGATCTGTTACATGCGCAATCATGCG 416788 Query 20263 AGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCT 20322 || || || | ||| ||||| || |||||||| |||| ||||| || | || | Sbjct 416787 TGTCAAAAGTGCATAAGAAGCAATATTGAAAGGAACACCCAGCCCCATATCACAAGAACG 416728 Query 20323 CTGATACAGCTGACAGGAAAGCT---------CACCGTC------------AGCTACATA 20361 ||||| ||| ||| || | || | || || || |||||| Sbjct 416727 TTGATAGAGCACACAAGATAACTTGGCACGTCCGCCATCCTGCGGTGGATTAGATACATA 416668 Query 20362 AAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421 ||||||||| || ||||| || || | ||||| | | | || || |||||||| Sbjct 416667 AAATTGACAAAAGGCATGACAAGGTGGTAAAGCCATGATAGGAATATCTGCAGGGTTCCA 416608 Query 20422 CGCACACATAATGATTCTTCTATC-GTGCGGATTATTTTTTAT----TAAATCCACAATG 20476 || | | ||||||||| | ||| ||| ||||| |||||||| | ||| ||| || Sbjct 416607 TGCTGATAGAATGATTCTGCGATCAGTG-GGATTGTTTTTTATAGTGTCAAT-CAC-TTG 416551 Query 20477 TACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCC 20536 | ||||| |||| || || |||||||| |||||||| || ||||| || Sbjct 416550 T--TGTAATTGATCAATGCCTTGTCCTGTATAATCAGCATCACAATCAACGTATTTGGCA 416493 Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCC 20596 |||||||| ||||| || || ||||| || ||||| | ||| || || | | ||| | Sbjct 416492 CCAAAGTGTCTCCATTGAAATCCGTAGACTGGTCCAAGATCGCCTTCACGACGGTGAGTA 416433 Query 20597 AGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC---TCCT 20653 || || | | | || | || | || || || ||||| |||||||| || | Sbjct 416432 AGACCCAACTTGTCGAGATATTCGCGAGAACCGTTGCCATCCCAAATCTTGACGTTTCTT 416373 Query 20654 GTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACT 20713 ||| || | | | |||| ||| || || | |||||||||||||||| || Sbjct 416372 TCACTT---AGATGCTTTGAGTTTGTATCTCCTTTAATGAACCAAAGCAGCTCTTCCAAG 416316 Query 20714 ACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 || || | | || || |||||||| || || | ||||| Sbjct 416315 ACTCCCCTGAAGAATACACGCTTTGTTGTCAGAAGTGGAAA 416275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441365153216240