Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 122 2e-22 seq107 111 4e-19 >seq1 Length=2399970 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || |||||||||||| || ||||| | | Sbjct 341873 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 341814 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | |||||| || || ||||| || | |||||| | ||| Sbjct 341813 AGAGTACGGCCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGG 341754 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| ||||| || || ||| || || || ||||| ||| ||| ||||| || Sbjct 341753 ATACCTTCCTTATCTTGAATCTTTTGC-TTGACATTTTCGATACTATCAGAAGATTCGAC 341695 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | || || ||||| ||||| |||||||| ||||| || |||||| Sbjct 341694 TTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATT 341646 Score = 116 bits (128), Expect = 9e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | ||| || || |||| || ||||||||| || ||||| || Sbjct 342574 TGACCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCA 342515 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || |||||||| | |||||| || ||||| || ||||| ||||| | Sbjct 342514 CTCAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGA 342455 Query 288364 GGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| ||||| || || ||| |||| || ||||| ||| |||| || || Sbjct 342454 GGGATACCTTCCTTATCTTGAATCTTTTGCTTG-ACATTTTCAATACTATCGGAAGACTC 342396 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || ||||||||||| || || ||||| Sbjct 342395 AACTTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 >seq107 Length=77526 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| |||||| | | | ||| ||||| ||||||||||| |||||||| || | Sbjct 39907 ATCGGCATGAATTCTGCCTTGATGTGCCAATACATCGAATTCGTTGCTGATCGCCTCATG 39848 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || | || || | |||| | | ||||| || | ||||||||| | Sbjct 39847 GTTGCTCTTGGATTCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACATG 39788 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCT 269331 || || || |||| ||||| |||||||| |||||||||||| |||||||||||| || Sbjct 39787 ATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGACTATCAACGTGCT 39728 Query 269332 GGTGTAATGAA 269342 ||||| ||||| Sbjct 39727 GGTGTCATGAA 39717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179633451549708