Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq27 98.7 1e-15 seq47 89.7 5e-13 seq17 89.7 5e-13 >seq1 Length=2399970 Score = 129 bits (142), Expect = 6e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| |||||||| || | || || || | || || || || Sbjct 341849 TGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTGT 341790 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || | ||| ||||| ||||| || ||||| || ||||| || ||| Sbjct 341789 TTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTT 341730 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||| ||| || | ||||| | || ||||||| ||| | ||||||||||| Sbjct 341729 TGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTGCCGGTA 341670 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 | ||| |||||||| ||||||||||| Sbjct 341669 AGAGTCTTTACGAAGATTTGCATTTT 341644 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||| || || |||| || ||||||||||||||||| ||||| Sbjct 342572 ACCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACT 342513 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| || || || || || ||||||| || || ||||| ||||| Sbjct 342512 CAAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGG 342453 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || |||||||| ||| || | |||| | || || Sbjct 342452 GATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAAC 342393 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || || | ||| || || || |||||||| Sbjct 342392 TTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| |||||||| || | || || | |||||||| || Sbjct 342319 TGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCCATCTTCAAGTTGT 342260 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| || || |||||||| |||||||| ||||| || ||||| || ||| Sbjct 342259 TTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGGATCTTT 342200 Query 64361 TGCTTTACA 64369 ||||| ||| Sbjct 342199 TGCTTGACA 342191 >seq27 Length=327670 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||||||||| | ||| || ||||||| || || Sbjct 85900 TGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGT 85841 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| ||||||| || || || || ||||| || ||||| || ||||| || ||| Sbjct 85840 TTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTT 85781 Query 64361 TGCTTTACA 64369 ||||| ||| Sbjct 85780 TGCTTGACA 85772 >seq47 Length=189370 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 155226 GTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAAT 155285 || || || || |||| ||| ||||| |||| || | |||||| || ||||| | Sbjct 153260 GTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATC 153319 Query 155286 TGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTG 155345 || || |||| ||| || ||||| |||||||||||||||||||| | | | Sbjct 153320 TGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTTCA 153379 Query 155346 GCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCC 155405 | | |||||||| || || || || || ||||| || || || ||||||||||| Sbjct 153380 GACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATCGCA 153439 Query 155406 ACGCGCATCAGCATGTGTTGAATGCGCTCCGCAA 155439 || ||||| | || |||||| || || |||| Sbjct 153440 ACACGCATAATCAAATGTTGAGGACGTTCAGCAA 153473 >seq17 Length=565816 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 155226 GTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAAT 155285 || || || || |||| ||| ||||| |||| || | |||||| || ||||| | | Sbjct 456007 GTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATT 456066 Query 155286 TGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTG 155345 || || |||| ||| || ||||| ||||||||||||||||| || | | | | Sbjct 456067 TGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAGTATCTTTCG 456126 Query 155346 GCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCC 155405 | | |||||||| || || || || || ||||| || || || |||||||| || Sbjct 456127 GACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATTGCA 456186 Query 155406 ACGCGCATCAGCATGTGTTGAATGCGCTCCGCAA 155439 || ||||| | || |||||| || || |||| Sbjct 456187 ACACGCATGATCAAATGTTGAGGACGTTCAGCAA 456220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636143653840