Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 125 7e-24 seq4 125 7e-24 seq1 116 4e-21 seq17 114 1e-20 seq27 107 2e-18 seq47 105 7e-18 >seq9 Length=817392 Score = 125 bits (138), Expect = 7e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||| || | | || |||||||| ||||||||||||||| Sbjct 168559 CCACCACGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTC 168618 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| |||||||||||||||| | |||| ||||| |||||||| ||||| Sbjct 168619 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 168678 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGG 138556 |||||||| ||||| || ||||| || | | || | |||||||| Sbjct 168679 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTCGG 168727 >seq4 Length=1094480 Score = 125 bits (138), Expect = 7e-24 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||| |||||||| | |||||| || |||||||||||||| | | Sbjct 349626 GATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCGAGTTGTTTACCAGCA 349567 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| ||||| || ||||| |||||||| ||||| || |||||||||| | Sbjct 349566 AAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTTACA 349507 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | || || || || | || | || || ||||| || || || Sbjct 349506 TTG-TCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTTCCAGTAAGTGTCTT 349448 Query 138600 TACAAAAATCTGCATG 138615 ||||| || |||||| Sbjct 349447 GACAAAGATTTGCATG 349432 >seq1 Length=2399970 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | || | | || || ||||||||||| || || ||| Sbjct 342571 CCGCCACGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTC 342512 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| |||||||||||||| | | || ||||| |||||||| ||||| Sbjct 342511 AAAGTACGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGG 342452 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || || ||||| || | | ||| | | |||| ||||| || Sbjct 342451 ATACCTTCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACT 342392 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| ||||| || ||||| || ||||| Sbjct 342391 TCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| ||||||||||| | |||||| ||||||||||||||||| | | Sbjct 341840 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTGTTTACCAGCA 341781 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||||||||| ||||| |||||||| || || || ||||| || | Sbjct 341780 AAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTGACA 341721 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | | || | || || || || | || | || || || || ||||| ||| Sbjct 341720 TTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTGCCGGTAAGAGTCTTT 341661 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 341660 ACGAAGATTTGCAT 341647 >seq17 Length=565816 Score = 114 bits (126), Expect = 1e-20 Identities = 421/654 (64%), Gaps = 13/654 (2%) Strand=Plus/Plus Query 153888 GGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACC 153947 ||||| | ||| ||||| | | || | |||| || ||||||| ||||| || | | Sbjct 455650 GGACAAAACAGAGACCAATCACCACCGTCTCTGACACGCTGCATGAAGAGATCAGGAATC 455709 Query 153948 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGA 154007 ||||| || || | || ||||| || || || || ||| | ||| | || | Sbjct 455710 CAGAGAGCATAGAACAGATCGCGAGCTCTGATTTCGTCTTTGCCAAAGTTTTTTCGCAAA 455769 Query 154008 TTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTA 154067 | | | | | | ||||| || ||||||||||| | ||| | || | || || | Sbjct 455770 TCTAAAAAGGTGAAAATGTCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGA 455829 Query 154068 CGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGT 154124 || || ||||| |||||||| | || || |||||||||| || || | |||||| Sbjct 455830 CGTTTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGC 455889 Query 154125 TCCAGGCCGCTTGCGGTGCCGTTGGT--CG--AATTGATCTTGCTGCCGCGGGCGCGCAC 154180 | ||| | | | |||||||| || ||| || | || | || || | Sbjct 455890 AGTAATCCGTTGGAGTAACCGTTGGTGCCGGCAATATATGAT----CCACTAGCACGAAT 455945 Query 154181 TTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCA 154239 | || | ||| | |||||||||||| || || ||| || || ||| ||| | Sbjct 455946 GTTGTGAATGTTCAAGCCAATGCCGCCTGCTGT-CTTGGAGATTTGAGCACAGATTTTGA 456004 Query 154240 GCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACA 154299 ||||| ||||| || ||||| ||| || | | ||||||||| || ||| ||| Sbjct 456005 GCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACA 456064 Query 154300 TTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTT 154359 |||| ||| | || || || ||| || || ||||| ||||| || || | ||| Sbjct 456065 TTTGGGGACGAGGTGTGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTGAAGTATCTTT 456124 Query 154360 GGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCG 154419 | ||||| | ||| || || || || | || ||||| || || || |||| | Sbjct 456125 CGGACATCAAGTTGTATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATTG 456184 Query 154420 CGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGAT 154479 | || ||||||| || || || |||||||| || | | ||||||||| | || | Sbjct 456185 CAACACGCATGATCAAATGTTGAGGACGTTCAGCAATCTTGCCGTCAATCTTGAGAAGGT 456244 Query 154480 ATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCAT 154533 | | |||||||||||| |||| || | ||||| | ||||| | |||| Sbjct 456245 AAGAACGCTCGAGGGTTTTGAAACCAAAGAAGTTGTACTTGAAATCACGGTCAT 456298 >seq27 Length=327670 Score = 107 bits (118), Expect = 2e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | || ||||||||||||||||| || ||| Sbjct 85924 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 85865 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| |||||||||||||||| | || ||||| ||||| || ||||| Sbjct 85864 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 85805 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTC 138554 |||||||| || || ||| ||||| || | |||| || | |||||| Sbjct 85804 ATACCTTCCTTATCTTGGATCTTTTGCTTGACATTG-TCAATGGTGTC 85758 >seq47 Length=189370 Score = 105 bits (116), Expect = 7e-18 Identities = 338/519 (65%), Gaps = 13/519 (3%) Strand=Plus/Plus Query 154023 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCC 154079 || || || ||||||||||| | ||| | || | || || |||||| ||||| Sbjct 153038 ATATCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCGCCCGGACGCTTATTACCGCCT 153097 Query 154080 TGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCG 154139 |||||||| | || || |||||||||| || || | |||||| || ||| | | | Sbjct 153098 TGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGCATGGGCAATAGTCCGTTGGAG 153157 Query 154140 GTGCCGTTGGT--CG--AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAAC 154195 |||||||| || ||| || | || | || || | | || | ||| | Sbjct 153158 TAACCGTTGGTACCGGCAATGTATGAT----CCACTAGCACGAATGTTGTGAATGTTCAA 153213 Query 154196 GCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGC 154254 |||||| || || || || ||| || || ||| ||| |||||| ||||| | Sbjct 153214 GCCAATACCACCTGCTGT-CTTGGAGATTTGAGCACAGATTTTGAGCGTCTCATAGATAC 153272 Query 154255 CGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCG 154314 | ||||| ||| || | | ||||||||| || ||| |||| || ||| | | Sbjct 153273 CTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGACATCTGGGGACGAGGTG 153332 Query 154315 TTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGT 154374 | || || ||| || || ||||| ||||| ||||| | ||| ||||| | || Sbjct 153333 TGCCTGCATTAAATAGAGTAGGACTAGCGTGTGTAAAGTATCTTTCAGACATCAAGTTGT 153392 Query 154375 ACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCA 154434 | || || || || | || ||||| || || || |||| ||| || ||||| | || Sbjct 153393 ATGTCTCAATAGCTGCATCAATATCGGTTCCATGGATACCGATCGCAACACGCATAATCA 153452 Query 154435 TGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGG 154494 || || |||||||| || | | ||||||||| | ||| || | |||||||| Sbjct 153453 AATGTTGAGGACGTTCAGCAATCTTGCCGTCAATCTTGAGGAGGTAAGAACGTTCGAGGG 153512 Query 154495 TTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCAT 154533 ||||| |||| || | ||||| | ||||| | |||| Sbjct 153513 TTTTGAAACCAAAGAAGTTGTACTTGAAATCACGGTCAT 153551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253802253920