Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq1 96.9 2e-15 >seq4 Length=1094480 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| ||||| || ||||| ||| | | | ||||| Sbjct 349641 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCG 349582 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || | ||| ||||| || ||||| ||||||||||| | Sbjct 349581 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 349522 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||||||| | || ||||| || | ||| || ||||| ||||| || || Sbjct 349521 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTT 349462 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 349461 CCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 >seq1 Length=2399970 Score = 96.9 bits (106), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | |||||| |||||| | || | ||| || ||||| ||||| ||||||||| Sbjct 342029 TCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTG 341970 Query 15082 TCACAAAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAA 15139 || || ||||||| ||| |||| ||| | || ||| || |||||||||| Sbjct 341969 TCTTGGATCTTTTGCTTG--ACATTTTCGATACTNTCAGAATTACGAACTTCTAAGGTAA 341912 Query 15140 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | |||||||| || ||||| || ||||| ||||||||| Sbjct 341911 TAGTTTTACCAGTAAGAGTCTTGACAAAGATTTGCATA 341874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385962979010