Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq107 86.0 6e-12 seq1 86.0 6e-12 >seq107 Length=77526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 ||||| ||| |||||| ||| ||||| | || ||||| |||| || | | || Sbjct 39961 GAAGCTGTCAGCATTGAACAGGAATTTTTGACGGATGCTCTTCCCGTTGCTCTCATCGGC 39902 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 ||||| | | ||||| | | ||||||||||| || || || ||||| | ||| | Sbjct 39901 ATGAATTCTGCCTTGATGTGCCAATACATCGAATTCGTTGCTGATCGCCTCATGGTT--G 39844 Query 47475 CTAAAGTATCC--CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | || | |||||||||| | |||||||| || |||||| ||| || | Sbjct 39843 CTCTTGGATTCGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGACATGATCT 39784 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAACGT 47585 | || | |||||||||||||| || || ||||| ||| || ||| ||||| Sbjct 39783 CTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGACTATCAACGT 39731 >seq1 Length=2399970 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||||||||| || ||||| | || || ||| || || || ||||| ||| Sbjct 342541 GTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCGAGTTGTTTACCA 342482 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || || || || ||||| || || ||||| || || || |||||| Sbjct 342481 GCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTTGCTTG 342422 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | || | | ||| ||||| | ||| | || || || || ||||| Sbjct 342421 ACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTACCAGTAAGAGTC 342362 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 342361 TTGACAAAGATTTGCAT 342345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492561948640