Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq17 136 4e-27 seq1 111 1e-19 seq4 109 5e-19 seq9 91.5 1e-13 seq47 87.8 2e-12 >seq17 Length=565816 Score = 136 bits (150), Expect = 4e-27 Identities = 864/1364 (63%), Gaps = 42/1364 (3%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| | || |||||| ||||||| || ||||||| || || || || | || ||| | Sbjct 456224 AAGATTGCTGAACGTCCTCAACATTTGATCATGCGTGTTGCAATCGGTATCCATGGAACC 456165 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || || || || | || || ||| | |||||||| ||| || ||||| ||||| Sbjct 456164 GATATTGATGCAGCTATTGAGACATACAACTTGATGTCCGAAAGATACTTCACACACGCT 456105 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTG-CCTCAGTTGTCTTCGTGTTTTTTGCT 123076 ||||| ||| | || || ||||| | | | || || ||||||| || || ||||| Sbjct 456104 AGTCCTACTCTATTTAATGCAGGCAC-ACCTCGTCCCCAAATGTCTTCTTGCTTCTTGCT 456046 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGAT-TGCGCGTTGA 123135 |||| || ||||| ||| ||||||||||| || | | || || || | Sbjct 456045 CACCATGAAGGAAGATTCGATCGAAGGTATCTATGAGACGCT-CAAAATCTGTGCTCAAA 455987 Query 123136 TTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCC 123195 | ||||| | |||||||| ||| ||||| | ||| || | | | | ||| Sbjct 455986 TCTCCAAGACAGCAGGCGGCATTGGCTTGAACATTCACAACATTCGTGCTAGTGGATCAT 455927 Query 123196 GCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATA 123255 || ||||| |||| | || ||| | ||||||| || |||| ||| | Sbjct 455926 ATATTGCCGGCACCAACGGTTACTCCAACGGATTACTGCCCATGCTCCGTGTTTTCAACA 455867 Query 123256 ACGCCGTGCGGCACGTCGACCAGGGCGGCAA---ACGCAAAGGCGCGATGGCGATCTATC 123312 | | | || | ||||| || ||||| || ||| ||||| | || || || Sbjct 455866 ATACGGCTCGTTATGTCGATCAAGGCGGTAATAAACGTCCGGGCGCATTCGCAATGTACT 455807 Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTT---AAAACGCAACATGGGGG 123369 | ||||| ||||| | || | | | |||||| |||| |||| ||| | || Sbjct 455806 TGGAACCCTGGCATGCAGACATTTTCACCTTTTTAGATTTGCGAAAA---AACTTTGGCA 455750 Query 123370 CGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGC 123429 || |||| | ||| |||||| |||| || ||| | ||| | || ||| | || |||| Sbjct 455749 AAGACGAAATCAGAGCTCGCGATCTGTTCTATGCTCTCTGGATTCCTGATCTCTTCATGC 455690 Query 123430 GACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGA 123489 || || | ||||| || | ||||| || | |||||| || | ||| || || Sbjct 455689 AGCGTGTCAGAGACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAGGCTCCTGGATTAC 455630 Query 123490 GCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAAC 123549 || ||| || || |||||| | | || | ||||||| || ||||| || Sbjct 455629 ATGAAATTTGGGGTGATGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGG--AAG 455572 Query 123550 AGGTT-AGTCAGGTTCC-GGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 || | || | || ||| | | ||| | ||| | || | ||| || Sbjct 455571 AGCTAGAGAAACAATCAAGGCTCAAAAGCTGTGGTATGCCATTTTGGAGGCTCAAACGGA 455512 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 || || | |||| ||| ||||| || || || || ||||| || | |||||| || Sbjct 455511 GACAGGTAATCCGTTCATACTCTATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAA 455452 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC-G 123726 |||||| || || ||||| || || || || | |||||| | |||||| ||| || | Sbjct 455451 CTTGGGTACGATCAAATGCAGCAACCTGTGTACAGAAATTGTTGAATACT-CGAGTCCTG 455393 Query 123727 ATCAAGTGGCCGTGTGTAATTTGGCTTCGATT----TGCGTGAATCGTTGCG-----TCG 123777 | |||| || || ||||| ||||| || ||| ||| | | | || | | | Sbjct 455392 ACGAAGTCGCTGTCTGTAACTTGGCCTCCATTGCTCTGCCT--ACCTATGTGATTAATAG 455335 Query 123778 AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGT-AGTAAAGAAT 123836 | || | | | ||||||||| || | | || || | | | || | || Sbjct 455334 AGAAAAG----TATGATTTCCAAAAACTGCACGATGTTACCAAGGTTATCACTAGA-AAC 455280 Query 123837 TTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTG-TCTAATTT 123895 |||||||| || |||||| | |||| || ||| | ||||| || | || || Sbjct 455279 TTGAACAAGATCATCGATATCAATTACTACCCTGTCATCGAAGC-CGAAAGATCCAACAA 455221 Query 123896 GAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG 123955 || ||| |||||| | || | || ||||||| || |||||| | || | || || Sbjct 455220 GAGACATAGACCGATTGGTTTAGGTGTTCAAGGCTTAGCCGACACTTTCATGGCTCTTCG 455161 Query 123956 CATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTA 124015 | || | ||| ||||| ||| ||| || | ||||| ||||| || || Sbjct 455160 CTATCCATTCGATTCACCTGAAGCCAAGCAGCTGAACATTCAAATCTTTGAAACCATCTA 455101 Query 124016 TTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAATTCACGGCGCGTACGAAAGTT 124074 | | || ||||| || |||||| | || ||||| | | || | ||||||| | Sbjct 455100 CCATGCTGCCTTGGAAGCCTCCTGCGAGTTGGCTGAAAAGT-ATGGACCCTACGAAACCT 455042 Query 124075 ACGCGGGCAGCCCGGCGAGCCGAGG-TATTTTGCAGTACGACATGTGGAATGCTACACCG 124133 | | ||||| || | | || ||| ||| |||| |||||||||||||||| ||||| Sbjct 455041 ATGAAGGCAGTCCTGT-ATCCAAGGGTATCCTGCAATACGACATGTGGAATGTCACACCT 454983 Query 124134 ACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAAC 124193 || ||| | ||||||||| || | || || || | | ||| ||| | |||||| Sbjct 454982 ACCAATCTCTGGGACTGGGCCGCACTCAAGGAAAAGATTGCCAAGCATGGTGTCCGTAAC 454923 Query 124194 TCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAAT 124237 || ||| |||| || ||||| || || ||||| ||||||| Sbjct 454922 TCTCTGCTGGTTGCTCCTATGCCTACTGCTTCCACTTCTCAAAT 454879 >seq1 Length=2399970 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| ||||| || |||||||| || | || | || || Sbjct 342553 ACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTCG 342494 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || ||| | || | ||||| ||||| || || || ||||| ||||||||| Sbjct 342493 AGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 342434 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||||| |||| ||| | | ||||||||||| ||||| | || | || || Sbjct 342433 ATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTTA 342374 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||| |||||||| Sbjct 342373 CCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || || || || || ||| || | |||| Sbjct 341849 TGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTGT 341790 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || || ||||| || || || ||||| ||||||||||| ||| Sbjct 341789 TTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTT 341730 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| ||| | | || ||||| |||||||| | ||||| || |||||||| Sbjct 341729 TGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTGCCGGTA 341670 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || |||||||| Sbjct 341669 AGAGTCTTTACGAAGATTTGCAT 341647 >seq4 Length=1094480 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| ||||| ||||| | || ||| || | |||| Sbjct 349635 TGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCGAGTTGT 349576 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||| || || || ||||| ||||| || |||||||| ||| Sbjct 349575 TTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 349516 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || | ||||| ||||| || ||||| | ||||| || || || || Sbjct 349515 TGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTTCCAGTA 349456 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 349455 AGTGTCTTGACAAAGATTTGCAT 349433 >seq9 Length=817392 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || || |||||||||||||| || || ||||| | ||| | || || Sbjct 168577 ACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCG 168636 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || || | || | ||||| ||||| || ||||| ||||| || |||||| Sbjct 168637 AGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGA 168696 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAA 45284 || ||||| |||| || | || | |||||||||| Sbjct 168697 ATCTTTTGCTTGA-CGTTGTCAATGGTGTCGGAA 168729 >seq47 Length=189370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 548/869 (63%), Gaps = 13/869 (1%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| | || |||||| ||||||| || | ||||| || || || || | || ||| | Sbjct 153477 AAGATTGCTGAACGTCCTCAACATTTGATTATGCGTGTTGCGATCGGTATCCATGGAACC 153418 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || || || || | || || ||| | ||||||||| ||| || || || ||||| Sbjct 153417 GATATTGATGCAGCTATTGAGACATACAACTTGATGTCTGAAAGATACTTTACACACGCT 153358 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTG-CCTCAGTTGTCTTCGTGTTTTTTGCT 123076 ||||| ||| | || || ||||| | | | || ||| ||||||| || || ||||| Sbjct 153357 AGTCCTACTCTATTTAATGCAGGCAC-ACCTCGTCCCCAGATGTCTTCTTGCTTCTTGCT 153299 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGAT-TGCGCGTTGA 123135 |||| || ||||| ||| ||||||||||| || | | || || || | Sbjct 153298 CACCATGAAGGAAGATTCGATCGAAGGTATCTATGAGACGCT-CAAAATCTGTGCTCAAA 153240 Query 123136 TTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCC 123195 | ||||| | || || || ||| ||||| | ||| || | | | | ||| Sbjct 153239 TCTCCAAGACAGCAGGTGGTATTGGCTTGAACATTCACAACATTCGTGCTAGTGGATCAT 153180 Query 123196 GCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATA 123255 ||| | ||| |||| | || ||| || ||||||| || |||| ||| | Sbjct 153179 ACATTGCCGGTACCAACGGTTACTCCAACGGACTATTGCCCATGCTCCGTGTTTTCAACA 153120 Query 123256 ACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATC 123312 | | | || | ||||| || ||||| || || ||||| | || || || Sbjct 153119 ATACGGCTCGTTATGTCGATCAAGGCGGTAATAAGCGTCCGGGCGCATTCGCAATGTACT 153060 Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGG 123372 | ||||| ||||| | ||| | | | |||||| | ||| | ||| | || | Sbjct 153059 TGGAACCCTGGCATGCAGATATTTTCACCTTTTTAGACTTACGAAAAAACTTTGGCAAAG 153000 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 | |||| | ||| || ||| |||| || ||| | ||| | || ||| | || |||| | Sbjct 152999 ACGAAATCAGAGCTCGTGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGC 152940 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCG 123492 | || | ||||| || | ||||| || | |||||| || ||| || || | Sbjct 152939 GTGTCAGAGACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAAGCTCCTGGATTACATG 152880 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGG 123552 | | | || | |||||| | | || | ||||||| || ||||| || || Sbjct 152879 AAATCTGGGGTGACGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGG--AAGAGC 152822 Query 123553 T-TAGTCAGGTTC-CGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610 | || | || ||| | | | | | ||| | ||| | ||| || || Sbjct 152821 TAGAGAAACAATCAAGGCTCAAAAGCTATGGTATGCCATTTTGGAAGCTCAAACGGAGAC 152762 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 || | |||| ||| ||||| || || || || ||||| || | |||||| ||||| Sbjct 152761 AGGTAATCCGTTCATACTCTATAAGGATGCTTGTAACAGAAAGAGTAATCAGCAAAACTT 152702 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGA-TGCCGATC 123729 ||| || || || || || ||||| || | |||||| | |||||| ||| | | ||| Sbjct 152701 GGGTACGATCAAGTGCAGCAATCTGTGTACAGAAATTGTTGAATAC-TCGAGTCCTGATG 152643 Query 123730 AAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 |||| || || ||||| ||||| || ||| Sbjct 152642 AAGTCGCTGTCTGTAACTTGGCCTCCATT 152614 Score = 86.0 bits (94), Expect = 6e-12 Identities = 285/441 (65%), Gaps = 2/441 (0%) Strand=Plus/Plus Query 124212 ATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACT 124271 ||||| || || | |||| |||||| || || || ||||||| ||||||||| | |||| Sbjct 108292 ATGCCTACTGCTAGCACTAGTCAAATATTGGGTAATAACGAATGCTTCGAGCCTTACACT 108351 Query 124272 AACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTG 124331 | |||| | || ||| || || | ||| || || ||| | | || || ||||| Sbjct 108352 AGCAATATTTATACGCGTCGTGTTCAAAGCGGTGAATTCCAAATTGTCAACCAACATTTA 108411 Query 124332 GTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCG 124391 || | || | | | | |||| | |||| ||||| ||| || || || Sbjct 108412 CTGAATGATCTCATTGAACTCGATTTATGGAATGATAACATCAAGAACATGATGATCGCT 108471 Query 124392 GCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAA 124451 || || || | ||||| || || ||||| || | |||| | || ||||| Sbjct 108472 CATGGCGGTAGTATCCAGCGTATTCCTGGCATTCCTGATGATCTCAAAAAGCTATACAAG 108531 Query 124452 ACCGTGTGGGA-AATGAAAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTA 124510 ||||||||||| | | | || ||| ||| ||||| ||||||| || |||| || | Sbjct 108532 ACCGTGTGGGAGATTTCACAAAGAACTATT-ATTGACATGGCCGCTGATAGAGGAGCCTT 108590 Query 124511 CACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGAC 124570 | || ||| ||||||| | || ||||| || ||||| | || | | |||| Sbjct 108591 TATTGACCAATCTCAATCTATGAATTTGTTTACTGCCGAACCAAACTTTGGCAAATTGAC 108650 Query 124571 CAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAAC 124630 || ||| | | || |||| | ||||| || || |||||||| || || ||| | Sbjct 108651 TTCTATGCACTTTTATGCCTGGAAGAAGGGACTAAAGACTGGCATGTACTATTTGAGATC 108710 Query 124631 CAAACCGGCGGCCGATGCCAT 124651 | ||| || | ||||| || Sbjct 108711 TAGACCTGCAGTTGATGCAAT 108731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451995369044560