Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq47 122 1e-22 seq17 104 4e-17 >seq47 Length=189370 Score = 122 bits (134), Expect = 1e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 203867 ACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTAC 203926 || ||||| || ||||| |||||||||||| |||||||| ||||||| ||| | || Sbjct 108722 ACTGCAGGTCTAGATCTCAAATAGTACATGCCAGTCTTTAGTCCCTTCTTCCAGGCATAA 108663 Query 203927 ATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGG 203986 | |||||| |||| || ||||| | ||| || ||||| | | |||| ||| || Sbjct 108662 AAGTGCATAGAAGTCAATTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGA 108603 Query 203987 CTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAAT 204045 |||||| || |||||| || | ||| |||||||| | ||||| || | || ||||| Sbjct 108602 GATTGGTCAAT-AAAGGCTCCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAAT 108544 Query 204046 CTCCCACACCGTCTTG 204061 ||||||||| |||||| Sbjct 108543 CTCCCACACGGTCTTG 108528 Score = 113 bits (124), Expect = 7e-20 Identities = 455/708 (64%), Gaps = 8/708 (1%) Strand=Plus/Plus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || || || || || |||| || | |||||| | | |||| | ||||| ||| | Sbjct 152660 TCAACAATTTCTGTACACAGATTGCTGCACTTGATCGTACCCAAGTTTTGCTGATTACTC 152719 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || | |||||| | ||||| || | |||||||| | || ||||| | |||| | | Sbjct 152720 TTTCTGTTACAAGCATCCTTATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCTTCC 152779 Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGACT 205061 | |||| ||| | | |||||| | ||| ||| | || || |||| | | Sbjct 152780 AAAATGGCATACCATAGCTTTTGAGCCTTGA-TTGTTTCTC-TAGCTCTTCCTTCACGTT 152837 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||||||| || || || ||||| || ||| | | || | || ||| || Sbjct 152838 CGTATTTTTCATAGAGAGCAACAAACTCGTCACCCCAGATTTCATGTAATCCAGGAGCTT 152897 Query 205122 TTTTGGGACACATCAGAGACCACATCTG-ATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 |||||||| | ||||||||| ||| | ||||| | || | || ||| || || || Sbjct 152898 CATTGGGACAAAACAGAGACCA-ATCACCACCGTCTCTGACACGCTGCATGAAAAGATCA 152956 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 ||||| || | || ||||||||||| || || ||| |||| | |||| ||| ||| Sbjct 152957 GGAATCCAGAGAGCATAGAACAGATCACGAGCTCTGATTTCGTCTTTGCCAAAGTTTTTT 153016 Query 205241 TTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 ||||| | | | ||| || || ||||| || || || ||| || | |||| Sbjct 153017 CGTAAGTCTAAAAAGGTGAAAATATCTGCATGCCAGGGTTCCAAGTACATTGCGAATGCG 153076 Query 205301 CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGC 205360 || || | ||| || || || || || || |||| | | ||||||||| || ||| Sbjct 153077 CCCGGACGCTTATTACCGCCTTGATCGACATAACGAGCCGTATTGTTGAAAACACGGAGC 153136 Query 205361 ATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTC 205420 || |||| || ||||||| | ||||| || | | ||| || || ||| | Sbjct 153137 ATGGGCAATAGTCCGTTGGAGTAACCGTTGGTACCGGCAATGTATGATCCACTAGCACGA 153196 Query 205421 ACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGC 205480 | |||| ||| | |||||| || || | ||||| ||| || || || || Sbjct 153197 ATGTTGTGAATGTTCAAGCCAATACCACCTGCTGTCTTGGAGATTTGAGCACAGATTTTG 153256 Query 205481 AGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCC 205540 || || ||||| ||| |||| ||||| ||| || || | || |||| |||| | Sbjct 153257 AGCGTCTCATAGATACCTTCGATCGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAAGAC 153316 Query 205541 AGCTTGGCA-AAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTG 205587 | || || | || | ||||| || | || || || || || ||||| Sbjct 153317 ATCTGGGGACGAGGT-GTGCCTGCATTAAATAGAGTAGGACTAGCGTG 153363 >seq17 Length=565816 Score = 104 bits (114), Expect = 4e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 203867 ACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTAC 203926 || ||||| || ||| | |||||||||||| ||||||| ||||||| ||| | || Sbjct 415996 ACTGCAGGTCTAGATCTTAAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAA 415937 Query 203927 ATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGG 203986 | |||||| || | |||||||| | ||| || ||||| | | |||| ||| || Sbjct 415936 AAGTGCATAGAGGTCAGTTTGCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGA 415877 Query 203987 CTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATC 204046 ||||||||| |||| | | ||| |||||||| | ||||| || | || |||||| Sbjct 415876 GATTGGTCGATAAAAGCTCCTCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATC 415817 Query 204047 TCCCACACCGTCTTG 204061 ||||| || || ||| Sbjct 415816 TCCCATACTGTTTTG 415802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141423936160