Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 123 6e-23 seq17 116 9e-21 seq4 116 9e-21 seq9 111 4e-19 seq47 107 5e-18 seq27 84.2 5e-11 >seq1 Length=2399970 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| ||||| || || ||||| | ||| || ||| |||||| Sbjct 342565 CGAAGACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTA 342506 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || || || ||||| |||||||| || ||||| ||| || ||| Sbjct 342505 CGACCGTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCT 342446 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||||||||| || ||| | | || | | || || ||||| Sbjct 342445 TCCTTATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAG 342386 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || ||||| || ||||| ||||| Sbjct 342385 GTGATGGTCTTACCAGTAAGAGTCTTGACAAAGATTTG 342348 Score = 113 bits (124), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || || ||||||| ||||||||||| | ||| | ||||| Sbjct 341858 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCC 341799 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || || ||||| || | ||| ||||| ||| || ||||| || Sbjct 341798 TCGAGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCT 341739 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||||||||| || ||||| | || | | ||| || || || || || ||| Sbjct 341738 TGAATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTC 341679 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || ||||| || || || ||||| |||||| Sbjct 341678 TTGCCGGTAAGAGTCTTTACGAAGATTTG---CATTTT 341644 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || || ||||||| ||||||||| | ||| | |||||| Sbjct 342328 AGGACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCCATCT 342269 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| || ||||| |||||||| ||| ||| ||||| || Sbjct 342268 TCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 342209 Query 199538 TGAATCTTTTGCTTCACGGATTCGA 199562 || ||||||||||| || ||||| Sbjct 342208 TGGATCTTTTGCTTGACATTTTCGA 342184 >seq17 Length=565816 Score = 116 bits (128), Expect = 9e-21 Identities = 176/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 || ||||| |||| ||||| || |||| ||||| ||||||| |||||||| | | Sbjct 455479 GCATCCTTATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCCTCCAAAATGGCATAC 455538 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | ||| || || | || ||| ||||||||||| ||||||| | |||||| Sbjct 455539 CACAGCTTTTGAGCCTTGATTGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAG 455598 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 || | | || || | || ||||||| | | || ||||| || || |||||||| Sbjct 455599 AGAGCAACAAACTCATCACCCCAAATTTCATGTAATCCAGGAGCCTCATTGGGACAAAAC 455658 Query 167948 AGACTCCAATTTCCATCGGTCTC-GACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 168006 ||| ||||| ||| | ||||| ||| | || ||||||||| || | | |||| | || Sbjct 455659 AGAGACCAATCACCA-CCGTCTCTGACACGCTGCATGAAGAGATCAGGAATCCAGAGAGC 455717 Query 168007 GTAGAACA 168014 ||||||| Sbjct 455718 ATAGAACA 455725 >seq4 Length=1094480 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || |||||||||| ||| ||||| | ||| | |||||| Sbjct 349644 AGGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCT 349585 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || || ||||||||||| || || || ||| ||| ||||| || Sbjct 349584 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCT 349525 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||||| || || |||| ||||| | | ||| || || || || || ||| Sbjct 349524 TGAATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTC 349465 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| Sbjct 349464 TTTCCAGTAAGTGTCTTGACAAAGATTTG 349436 >seq9 Length=817392 Score = 111 bits (122), Expect = 4e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| || |||||||||| ||||||||| ||| || Sbjct 168565 CGAAGACGGAGAACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTA 168624 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || || ||||| ||||| ||||| || ||||| ||| ||| ||| Sbjct 168625 CGACCGTCTTCGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCT 168684 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || || |||||||||||||| ||| || | |||||| Sbjct 168685 TCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGTGTC 168725 >seq47 Length=189370 Score = 107 bits (118), Expect = 5e-18 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 167768 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 167827 || ||||| |||| ||||| || |||| ||||| |||||| |||||||| | | Sbjct 152732 GCATCCTTATAGAGTATGAACGGATTACCTGTCTCCGTTTGAGCTTCCAAAATGGCATAC 152791 Query 167828 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 167887 || || | ||| || || | || ||| ||||||||||| ||||||| | |||||| Sbjct 152792 CATAGCTTTTGAGCCTTGATTGTTTCTCTAGCTCTTCCTTCACGTTCGTATTTTTCATAG 152851 Query 167888 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 167947 || | | || || | || | ||||| | | || |||||||| || |||||||| Sbjct 152852 AGAGCAACAAACTCGTCACCCCAGATTTCATGTAATCCAGGAGCTTCATTGGGACAAAAC 152911 Query 167948 AGACTCCAATTTCCATCGGTCTC-GACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGC 168006 ||| ||||| ||| | ||||| ||| | || |||||| || || | | |||| | || Sbjct 152912 AGAGACCAATCACCA-CCGTCTCTGACACGCTGCATGAAAAGATCAGGAATCCAGAGAGC 152970 Query 168007 GTAGAACA 168014 ||||||| Sbjct 152971 ATAGAACA 152978 >seq27 Length=327670 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || |||||||| | |||||| ||| ||| || Sbjct 85918 CGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTA 85859 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || || |||||||| |||||||| || || || ||| || ||| Sbjct 85858 CGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCT 85799 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || || || ||||||||||| || Sbjct 85798 TCCTTATCTTGGATCTTTTGCTTGAC 85773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178900664562862