Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq107 86.0 6e-12 seq9 84.2 2e-11 seq4 84.2 2e-11 >seq1 Length=2399970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 || ||||||||||||| |||||||| || || || ||||| || || || | || |||| Sbjct 341639 TTTAAAAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAAGTCG 341698 Query 38296 AGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355 | | | || || | ||| | || |||| || | || || || || || || Sbjct 341699 AATCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATCCCTC 341758 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | ||||||||| | || || | || || ||||| || || || | || || ||| | Sbjct 341759 CTGACCAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTCTCTG 341818 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||| ||| | || || || ||||| || ||| Sbjct 341819 ACTACAACATCCAAAAAGAATCTACTCTTCACTTGGTCCTCCGT 341862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| |||| ||||| || || ||||| | ||||| || || || |||| ||| || | Sbjct 342199 AAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTCTTATTTTCGCTGGTA 342258 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 |||| || || || | || || || ||||||||||||||||| ||| | || || | Sbjct 342259 AACAACTTGAAGATGGCCGTACTCTNNNNGACTACAACATCCAAAAAGAATCTACTCTTC 342318 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 342319 ACTTGGTCCTCCGT 342332 >seq107 Length=77526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||||||||| ||| | ||| || || | | || | ||| |||||||| ||||| Sbjct 40023 CAAGCAAAGTCAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAA 40082 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| | || ||||| ||||||||||| |||| || || || || |||||| Sbjct 40083 CCAGGCATCAAACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAG 40142 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||| || || || || || || ||||| Sbjct 40143 ATACCTTCGACAGCAGCAAAGGCAACAAGACGCTC 40177 >seq9 Length=817392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| || | ||||| || || ||||| | |||||||| || || || | || || | Sbjct 168703 AAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAACGTCTTATCTTTGCCGGTA 168644 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 |||| || || |||| || ||| | | |||||||||||||||||||||| | || || | Sbjct 168643 AACAACTCGAAGACGGTCGTACCTTGAGCGACTACAACATCCAAAAGGAATCTACTCTCC 168584 Query 38446 ATTTGGTGCTGCGT 38459 | || || || ||| Sbjct 168583 ACTTAGTTCTCCGT 168570 >seq4 Length=1094480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || || || || | || || || | | Sbjct 349433 ATGCAAATCTTTGTCAAGACACTTACTGGAAAGACAATTACTTTAGAAGTTGAATCTTCT 349492 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||| |||| || | ||||| || || ||||| | || ||| Sbjct 349493 GACACTATCGACAATGTAAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 349552 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || ||||| || || || | || || || | |||||| ||| Sbjct 349553 CAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGTACTCTAAGCGACTATAAC 349612 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 349613 ATCCAAAAGGAATCTACTCTTCACTTGGTCCTTCGT 349648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164134506240