Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 165 2e-35 seq9 154 3e-32 seq4 152 1e-31 seq27 127 5e-24 seq47 100 6e-16 seq236 96.9 8e-15 seq17 96.9 8e-15 >seq1 Length=2399970 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || |||||||| || ||||| || | ||||| | ||||| ||||| || Sbjct 341850 GTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCGAGTTG 341791 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || |||||||||| |||||||| ||||| || ||||| || |||||||| || Sbjct 341790 TTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTT 341731 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || || | || ||| ||| ||||| | |||| ||||| || || Sbjct 341730 TTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTGCCGGT 341671 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | ||| |||||||| | |||||||| Sbjct 341670 AAGAGTCTTTACGAAGATTTGCATTT 341645 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||| || ||||||||||| || ||||| | ||| | || ||||| Sbjct 342554 AACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACCGTCTTC 342495 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| || ||||| ||||| || || ||||||||||| ||||| || ||||| || ||||| Sbjct 342494 GAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTG 342435 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||||||||||| || ||||| | || ||| || ||||| | ||| | ||||| Sbjct 342434 AATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATGGTCTT 342375 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | |||||| Sbjct 342374 ACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 131 bits (144), Expect = 4e-25 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || |||||||| || ||||| || ||||| | |||||||| || || Sbjct 342320 GTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCCATCTTCAAGTTG 342261 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| ||||| ||||| ||||| ||||| |||||||| ||||| |||||||| || || Sbjct 342260 TTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGGATCTT 342201 Query 195057 TTGCTTGACGTTCTCAAT 195074 ||||||||| || || || Sbjct 342200 TTGCTTGACATTTTCGAT 342183 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| ||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 342032 CCATCTTCAAGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCC 341973 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || ||||||||||| || || || | || ||| | ||||| | |||| Sbjct 341972 TTGTCTTGGATCTTTTGCTTGACATTTTCGATACTNTCAGAATTACGAACTTCTAAGGTA 341913 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||| || || || | |||||| Sbjct 341912 ATAGTTTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 341875 >seq9 Length=817392 Score = 154 bits (170), Expect = 3e-32 Identities = 130/157 (83%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| ||||| || || ||||| || ||||| ||| |||| || | || |||| Sbjct 168576 AACTAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTCAAG-GTACGACCGTCTT 168634 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| || ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct 168635 CGAGTTGTTTACCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATACCTTCCTTGTCTT 168694 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 |||| |||||||||||||| ||||||||||| ||||| Sbjct 168695 GAATCTTTTGCTTGACGTTGTCAATGGTGTCGGAACT 168731 >seq4 Length=1094480 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| || || || ||| ||||| | ||||||||||| || Sbjct 349636 GTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCGAGTTG 349577 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 349576 TTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTT 349517 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || || || ||||| ||| ||| ||||| | |||| |||||||| || Sbjct 349516 TTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTTCCAGT 349457 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 349456 AAGTGTCTTGACAAAGATTTGCAT 349433 >seq27 Length=327670 Score = 127 bits (140), Expect = 5e-24 Identities = 124/157 (79%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| || || || |||||||| |||||||| |||| || | || |||| Sbjct 85907 AACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAG-GTACGACCGTCTT 85849 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| || ||||| ||||| || || |||||||| || ||||| || ||||| || |||| Sbjct 85848 CGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTT 85789 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 | || ||||||||||| || ||||||||||| || || Sbjct 85788 GGATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 85752 >seq47 Length=189370 Score = 100 bits (110), Expect = 6e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 160571 ATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTG 160630 || ||||| | || | ||||| || |||||| | | |||||||||||| || | || Sbjct 152994 ATCAGAGCTCGTGATCTGTTCTATGCTCTCTGGATTCCTGATCTTTTCATGCAGCGTGTC 152935 Query 160631 AAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTT 160690 | |||| ||| |||||| || || |||||||||||||| |||||| | |||| | Sbjct 152934 AGAGACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAAGCTCCTGGATTACATGAAATC 152875 Query 160691 TATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGC 160743 | ||| |||||| | |||| ||||||| ||||||| || |||||||| Sbjct 152874 TGGGGTGACGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGC 152822 >seq236 Length=40127 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 ||||| | ||||| | ||||| || ||||| || || |||||||| || |||||| Sbjct 35542 AGAGTACGGCCATCNNNNNGTTGCTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGA 35483 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 || ||||| || ||||| || ||||||||||| || ||||||||||| || || Sbjct 35482 ATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGAGCT 35430 >seq17 Length=565816 Score = 96.9 bits (106), Expect = 8e-15 Identities = 201/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 160571 ATGAGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTG 160630 || ||||| | || | ||||| || |||||| | | ||||| |||||| || | || Sbjct 455741 ATCAGAGCTCGCGATCTGTTCTATGCTCTCTGGATTCCTGATCTCTTCATGCAGCGTGTC 455682 Query 160631 AAAGACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTT 160690 | |||| ||| |||||| || || ||||||||||| || |||||| | |||| || Sbjct 455681 AGAGACGGTGGTGATTGGTCTCTGTTTTGTCCCAATGAGGCTCCTGGATTACATGAAATT 455622 Query 160691 TATGGTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAG 160750 | ||| ||||| | |||| ||||||| ||||||| || |||||||| | | | Sbjct 455621 TGGGGTGATGAGTTTGTTGCTCTCTATGAAAAATACGAACGTGAAGGAAGAGCTAGAGAA 455562 Query 160751 GTCGTGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATG 160810 | ||||| ||| | |||||| || ||| | | || ||| ||| |||| Sbjct 455561 ACAATCAAGGCTCAAAAGCTGTGGTATGCCATTTTGGAGGCTCAAACGGAGACAGGTAAT 455502 Query 160811 CCCTTTATCGCATACAAGGATGCCATCTGTC-GCAAGAGTAACCAGAAGAACTTTGG 160866 || || || || ||||||| | | | | | |||||||| ||| | ||||| || Sbjct 455501 CCGTTCATACTCTATAAGGATG-CTTGTAACAGAAAGAGTAATCAGCAAAACTTGGG 455446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109461897687062