Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq4 86.0 4e-12 >seq1 Length=2399970 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/216 (71%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCAT 34830 ||||| ||||| || |||||| ||||||||||| || | || | | || | || | Sbjct 342554 AACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAG-TACGACCGTCTT 342496 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | || ||||| || || || || || ||||| ||||| | || | || ||||| || Sbjct 342495 CGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTT 342436 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTC-ACCG---GCCTCAACATCGACGGTTATG 34946 |||||| || ||||| || | || || | | || | |||||| || | ||| ||| Sbjct 342435 GAATCTTTTGCTTGAC--AT--TTTCAATACTATCGGAAGACTCAACTTCCAAGGTGATG 342380 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| |||||||| |||||| Sbjct 342379 GTCTTACCAGTAAGAGTCTTGACAAAGATTTGCATA 342344 >seq4 Length=1094480 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || || ||||||||||| || | || |||| || Sbjct 349641 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCG 349582 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| || ||||| || || ||||| || || | || | || |||||||| | Sbjct 349581 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 349522 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || || | ||||| ||| | ||||| || | || || || Sbjct 349521 ATCTTTTGTTTTAC--AT--TGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGT 349466 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || ||||| |||||||| ||||| Sbjct 349465 CTTTCCAGTAAGTGTCTTGACAAAGATTTGCAT 349433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628116329808