Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 seq4 145 6e-30 seq27 98.7 8e-16 seq225 86.0 5e-12 >seq1 Length=2399970 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| |||||||||||||| || ||||| || | || ||| | | |||| || Sbjct 341855 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCG 341796 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| ||||| ||||| || | | |||||| || || || || ||||| ||||||||| Sbjct 341795 AGTTGTTTACCAGCAAAGATAAGTCTCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGA 341736 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||||| || ||| |||| | | | ||||| | ||| ||||| | ||| | || ||| Sbjct 341735 ATCTTTTGCTTGACATTTTCGATACTATCAGAAGATTCGACTTCTAAAGTAATTGTCTTG 341676 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| ||||| || || ||||| Sbjct 341675 CCGGTAAGAGTCTTTACGAAGATTTGCAT 341647 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| |||||||||||||| || || ||||| | ||| | | Sbjct 342560 ACGAAGAACCAGGTGAAGAGTAGATTCTTTTTGAATGTTATAATCACTCAAAGTACGACC 342501 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||| ||||| || || || | ||| ||||| || || || || ||||| || Sbjct 342500 GTCTTCGAGTTGTTTACCAGCGAAAATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTT 342441 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| ||||| || ||| |||| | | | || || | || ||||| | |||| Sbjct 342440 ATCTTGAATCTTTTGCTTGACATTTTCAATACTATCGGAAGACTCAACTTCCAAGGTGAT 342381 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | ||| || ||||| || ||||| Sbjct 342380 GGTCTTACCAGTAAGAGTCTTGACAAAGATTTGCAT 342345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| |||||||||||||| || ||||| || | ||| | | |||| || Sbjct 342325 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCNNNNAGAGTACGGCCATCTTCA 342266 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| ||||| || || || | ||| || || || || ||||| ||||| || ||||| Sbjct 342265 AGTTGTTTACCAGCGAAAATAAGACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGG 342206 Query 101381 ATTTTTTGTTTTACAATTTC 101400 || ||||| || ||| |||| Sbjct 342205 ATCTTTTGCTTGACATTTTC 342186 >seq4 Length=1094480 Score = 145 bits (160), Expect = 6e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| |||||||| ||||| || || || ||| | ||| | | |||| || Sbjct 349641 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTATAGTCGCTTAGAGTACGGCCATCTTCG 349582 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| ||||| ||||| || | ||| |||||||| || ||||| ||||| || |||||| Sbjct 349581 AGTTGTTTACCAGCAAAGATGAGACGTTGTTGATCAGGAGGAATACCTTCCTTGTCTTGA 349522 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || |||||||||||| | || | ||||||||| | ||| ||||| | ||| | || || Sbjct 349521 ATCTTTTGTTTTACATTGTCGATAGTGTCAGAAGATTCAACTTCTAAAGTAATTGTCTTT 349462 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| || |||||| Sbjct 349461 CCAGTAAGTGTCTTGACAAAGATTTGCATG 349432 >seq27 Length=327670 Score = 98.7 bits (108), Expect = 8e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||||||||| ||||| || |||||||| | || | | Sbjct 85913 ACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACC 85854 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||| ||||| || || || | ||| |||||||| || || || ||||| || Sbjct 85853 GTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTT 85794 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 |||||| || ||||| || ||| | || | |||||||| Sbjct 85793 ATCTTGGATCTTTTGCTTGACATTGTCAATGGTGTCAGA 85755 >seq225 Length=43411 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/151 (74%), Gaps = 8/151 (5%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 ||| || || ||||| || ||||| ||||||| ||||||||| |||| || |||||||| Sbjct 3319 TTGTTTGCCAGCAAAGATTAAACGTTGTTGATTTGGCGGAATGTCTTCCTTTTCTTGAAT 3378 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTT----CAAGAGTGACCGTTT 101438 ||| ||| ||||| || ||||| ||||| | || |||| ||| | || ||||| Sbjct 3379 TTTGCTTTTCACAATATCAACAGTATCAGATGAGTCGACTTCTAACAAAACTG-CCGTT- 3436 Query 101439 TGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | | || || |||||||| ||||| Sbjct 3437 --CCAGCAAGTGTCTTGACAAATATTTGCAT 3465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271706114802