Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 seq4 84.2 3e-11 >seq1 Length=2399970 Score = 116 bits (128), Expect = 5e-21 Identities = 159/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 155811 TTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAA 155870 |||| ||| ||||||||||| || | || || | || || || || ||||| |||||| Sbjct 341636 TTATTTAA-AAAATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACAATTACTTTAGAA 341694 Query 155871 GTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATA 155930 |||||| |||||||| ||| ||| || || | || || |||||||| ||||| || Sbjct 341695 GTCGAATCTTCTGATAGTATCGAAAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATC 341754 Query 155931 CCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTA 155990 ||||| || ||||| ||| | || | ||| ||||| || ||||| ||| | | ||| | Sbjct 341755 CCTCCTGACCAACAGAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGCCGTACTCTC 341814 Query 155991 TCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || || || ||||| | || ||||| || || Sbjct 341815 TCTGACTACAACATCCAAAAAGAATCTACTCTTCACTTGGT 341855 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAG-TCGAAGATTC 155881 |||||||| ||| | || || | ||||| ||||||||||| ||||||| ||| | |||| Sbjct 341875 ATGCAAATCTTTGTCAAGACTCTTACTGGTAAAACTATTACCTTAGAAGTTCGTA-ATTC 341933 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| || || | || || ||||| || ||||| || ||||| || || Sbjct 341934 TGANAGTATCGAAAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGACCA 341993 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 ||| | | |||| || ||||| || || |||||| | | ||||| Sbjct 341994 GCAACGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTT 342041 >seq4 Length=1094480 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || ||| | |||||| || ||| | ||||||||| | ||| Sbjct 349661 ATGCAAATATTTGTCAAGACACTTGCTGGAACGACAATTTCGTTAGAAGTCAACTCATCT 349720 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | ||||||| |||||| ||||| | ||||| ||| || || | ||| Sbjct 349721 GATACCGTTGATATTGTGAAAAGTAAAATTCAAGAAAGAGAAGACATTCCGTCAAATCAA 349780 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | || || | ||| || || || |||||| || Sbjct 349781 CAACGTTTAATCTTTGCGGGCAAACAACTCGAAAAT 349816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731859320317600